Results 31 to 40 of about 4,294,998 (178)

Understanding the population structure of Moraxella catarrhalis using core genome multilocus sequence typing (cgMLST) and a life identification number (LIN) code classification system

bioRxiv
Moraxella catarrhalis is an important cause of infectious exacerbations of chronic obstructive pulmonary disease and otitis media. Previously, seroresistant (SR) and serosensitive (SS) lineages that differed in virulence potential were described, which ...
Yassine I, Jolley KA, Bray JE, Jansen van Rensburg MJ, Patel F, Sheppard AE, Zar HJ, Allen V, Tow LA, Maiden MC, Nicol MP, Brueggemann AB.   +11 more
europepmc   +2 more sources

Development of a core genome multilocus sequence typing (cgMLST) scheme and life identification number (LIN) code classification system for Staphylococcus aureus

bioRxiv
Staphylococcus aureus infects both humans and animals, and antimicrobial resistance, including multidrug resistance, complicates treatment of S. aureus infections. Understanding S.
Hadjirin NF, Yassine I, Bray JE, Maiden MC, Jolley KA, Brueggemann AB.   +5 more
europepmc   +2 more sources

Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain

Frontiers in Microbiology, 2020
Whole-genome sequencing (WGS)-based typing methods have emerged as promising and highly discriminative epidemiological tools. In this study, we combined gene-by-gene allele calling and core genome single nucleotide polymorphism (cgSNP) approaches to ...
Elisenda Miro, John W. A. Rossen, John W. A. Rossen, Monika A. Chlebowicz, Dag Harmsen, Sylvain Brisse, Virginie Passet, Ferran Navarro, Alex W. Friedrich, S. García-Cobos   +9 more
doaj   +2 more sources

FastMLST: A Multi-core Tool for Multilocus Sequence Typing of Draft Genome Assemblies

Bioinformatics and Biology Insights, 2021
Multilocus Sequence Typing (MLST) is a precise microbial typing approach at the intra-species level for epidemiologic and evolutionary purposes. It operates by assigning a sequence type (ST) identifier to each specimen, based on a combination of alleles ...
Enzo Guerrero-Araya, Marina Muñoz, César Rodríguez, Daniel Paredes-Sabja   +3 more
doaj   +2 more sources

A machine learning-based typing scheme refinement for Listeria monocytogenes core genome multilocus sequence typing with high discriminatory power for common source outbreak tracking [PDF]

PLoS ONE, 2021
Background As whole-genome sequencing for pathogen genomes becomes increasingly popular, the typing methods of gene-by-gene comparison, such as core genome multilocus sequence typing (cgMLST) and whole-genome multilocus sequence typing (wgMLST), are ...
Yen-Yi Liu, Chih-Chieh Chen
doaj   +3 more sources

Core genome multilocus sequence typing scheme for Bacillus cereus group bacteria. [PDF]

Research in Microbiology, 2023
Core genome multilocus sequence typing (cgMLST) employs a strategy where the set of orthologous genes common to all members of a group of organisms are used for phylogenetic analysis of the group members.
N. Tourasse, K. Jolley, A. Kolstø, O. Økstad   +3 more
semanticscholar   +2 more sources

Core Genome Multilocus Sequence Typing: a Standardized Approach for Molecular Typing of Mycoplasma gallisepticum. [PDF]

Journal of Clinical Microbiology, 2018
Mycoplasma gallisepticum is the most virulent and economically important Mycoplasma species for poultry worldwide. Currently, M.
Leyi Wang, Mostafa Ghanem, Mohamed El-Gazzar   +2 more
exaly   +3 more sources

Correction: Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. [PDF]

PLoS Neglected Tropical Diseases, 2020
[This corrects the article DOI: 10.1371/journal.pntd.0007374.].
Julien Guglielmini, Pascale Bourhy, Olivier Schiettekatte, Farida Zinini, Sylvain Brisse, Mathieu Picardeau   +5 more
doaj   +2 more sources

Development and evaluation of a core genome multilocus typing scheme for whole-genome sequence-based typing of Acinetobacter baumannii. [PDF]

PLoS ONE, 2017
We have employed whole genome sequencing to define and evaluate a core genome multilocus sequence typing (cgMLST) scheme for Acinetobacter baumannii. To define a core genome we downloaded a total of 1,573 putative A.
Paul G Higgins, Karola Prior, Dag Harmsen, Harald Seifert   +3 more
doaj   +2 more sources

Comparison of the effectiveness of core genome multilocus sequence typing and polymerase chain reaction-based open reading frame typing in tracing nosocomial methicillin-resistant Staphylococcus aureus transmission

Journal of Infection and Chemotherapy
INTRODUCTION A clonal shift from staphylococcal cassette chromosome mec (SCCmec) type II/ST5 methicillin-resistant Staphylococcus aureus (MRSA) to SCCmec type IV/clonal complex (CC)1 MRSA has occurred rapidly in Japan.
Kenji Ota, Hiroo Hasegawa, Norihito Kaku
exaly   +2 more sources