Results 61 to 70 of about 2,074,615 (279)
Visualizing the Evolution of Historical Networks Using Small Multiples in Grid Charts
Journal of Historical Network Research, 2022 Historical time presents interesting conceptual problems for network visualization. The manifestations of time in historical network research (HNR) are similarly numerous and distinct.
Melanie Conroy +3 more
doaj +1 more source
Stochastic Block Transition Models for Dynamic Networks [PDF]
, 2015 There has been great interest in recent years on statistical models for dynamic networks. In this paper, I propose a stochastic block transition model (SBTM) for dynamic networks that is inspired by the well-known stochastic block model (SBM) for static ...
Xu, Kevin S.
core
The newfound relationship between extrachromosomal DNAs and excised signal circles
FEBS Letters, EarlyView.Extrachromosomal DNAs (ecDNAs) contribute to the progression of many human cancers. In addition, circular DNA by‐products of V(D)J recombination, excised signal circles (ESCs), have roles in cancer progression but have largely been overlooked. In this Review, we explore the roles of ecDNAs and ESCs in cancer development, and highlight why these ...
Dylan Casey, Zeqian Gao, Joan Boyes
wiley +1 more source
Universality in network dynamics [PDF]
Nature Physics, 2013 Despite significant advances in characterizing the structural properties of complex networks, a mathematical framework that uncovers the universal properties of the interplay between the topology and the dynamics of complex systems continues to elude us. Here we develop a self-consistent theory of dynamical perturbations in complex systems, allowing us
Barzel, Baruch, Barabasi, Albert-Laszlo
openaire +3 more sources
FEBS Letters, EarlyView.This study reveals how the mitochondrial protein Slm35 is regulated in Saccharomyces cerevisiae. The authors identify stress‐responsive DNA elements and two upstream open reading frames (uORFs) in the 5′ untranslated region of SLM35. One uORF restricts translation, and its mutation increases Slm35 protein levels and mitophagy.
Hernán Romo‐Casanueva +5 more
wiley +1 more source
Alignment of dynamic networks [PDF]
Bioinformatics, 2017 Abstract Motivation Network alignment (NA) aims to find a node mapping that conserves similar regions between compared networks. NA is applicable to many fields, including computational biology, where NA can guide the transfer of biological knowledge from well- to poorly-studied species across aligned
Vijayan, Vipin +2 more
openaire +3 more sources
Sequence determinants of RNA G‐quadruplex unfolding by Arg‐rich regions
FEBS Letters, EarlyView.We show that Arg‐rich peptides selectively unfold RNA G‐quadruplexes, but not RNA stem‐loops or DNA/RNA duplexes. This length‐dependent activity is inhibited by acidic residues and is conserved among SR and SR‐related proteins (SRSF1, SRSF3, SRSF9, U1‐70K, and U2AF1).
Naiduwadura Ivon Upekala De Silva +10 more
wiley +1 more source
Discrete & Continuous Dynamical Systems - S, 2011 Boolean networks are special types of finite state time-discrete dynamical systems. A Boolean network can be described by a function from an n-dimensional vector space over the field of two elements to itself. A fundamental problem in studying these dynamical systems is to link their long term behaviors to the structures of the functions that define ...
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Quantifying social network dynamics [PDF]
2012 Fourth International Conference on Computational Aspects of Social Networks (CASoN), 2012 The dynamic character of most social networks requires to model evolution of networks in order to enable complex analysis of theirs dynamics. The following paper focuses on the definition of differences between network snapshots by means of Graph Differential Tuple.
Michalski, Radosław +3 more
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Northeast Journal of Complex Systems, 2021 Here we present the entropic dynamics formalism for networks. That is, a framework for the dynamics of graphs meant to represent a network derived from the principle of maximum entropy and the rate of transition is obtained taking into account the natural information geometry of probability distributions.
Felipe Xavier Costa, Pedro Pessoa
openaire +5 more sources