Applications of large‐scale artificial intelligence models in bioinformatics
Abstract Large‐scale artificial intelligence (AI) models can mine potential patterns from massive amounts of data and provide more accurate analyses. This capability has enabled its gradual application in various areas of bioinformatics. However, few reviews have comprehensively summarized the applications of different types of large‐scale AI models in
Mingjing Li +5 more
wiley +1 more source
ALKBH5-mediated m6A demethylation of TXNDC5 drives malignant progression in gastric cancer. [PDF]
Peng W, Wei X, Zhou F, Xu H.
europepmc +1 more source
Integrating tDNA Epigenomics and Expression with Codon Usage Unravel an Intricate Connection with Protein Expression Dynamics in Trypanosoma cruzi [PDF]
Herbert G. S. Silva +5 more
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Ageing acts as a double‐edged sword in cancer. In the elderly, open chromatin, immunosenescence, and chronic inflammation drive SASP (IL‐6, MMPs), MDSC accumulation and T‐cell suppression, fostering tumor‐promoting microenvironments and limited therapeutic benefit.
Qi Wang +7 more
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Multiomics Data Synthesis of FAM83H in Amelogenesis Imperfecta. [PDF]
Leban T, Kunej T.
europepmc +1 more source
Large language models for bioinformatics
Abstract With the rapid advancements in large language model technology and the emergence of bioinformatics‐specific language models (BioLMs), there is a growing need for a comprehensive analysis of the current landscape, computational characteristics, and diverse applications.
Wei Ruan +54 more
wiley +1 more source
Single‐cell mitochondrial lineage tracing: Opportunities and challenges
Abstract Lineage tracing using endogenous mitochondrial DNA (mtDNA) variants holds great promise for reconstructing the lineage histories of individual cells, with broad applications in oncology, developmental biology, and regenerative medicine.
Siqi Li, Kun Wang, Xin Wang, Zheng Hu
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Omics in Nonsteroidal Anti-Inflammatory Drugs-Exacerbated Respiratory Disease: Current Evidence From the Upper and Lower Airways. [PDF]
iAkushev A +5 more
europepmc +1 more source
Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard. [PDF]
Lin YY +39 more
europepmc +1 more source
Molecular polymorphisms that underlie trait variation in crops: Lessons learned from soybean
Abstract Genetic variation within a germplasm is important in crop improvement, providing a foundation for breeders to develop new varieties. Traits of agronomic and economic importance are often mapped to identify the genetic basis of observed phenotypes, oftentimes using quantitative trait locus (QTL) analysis.
Mary Jane C. Espina +2 more
wiley +1 more source

