Results 51 to 60 of about 52,997 (194)

The Curious Case of CysE: Diversity and Distribution of Serine Acetyltransferases in Bacteria

open access: yesProteins: Structure, Function, and Bioinformatics, EarlyView.
ABSTRACT Serine acetyltransferase (CysE) is a member of the left‐handed β‐helix family of acetyltransferases that catalyze the rate limiting step in de novo cysteine biosynthesis. There are two isoforms of CysE that differ in length, with the shorter isoform lacking approximately 76 amino acids at the N‐terminus of the protein from the serine ...
Keely E. A. Oldham   +3 more
wiley   +1 more source

Co-Inheritance Analysis within the Domains of Life Substantially Improves Network Inference by Phylogenetic Profiling.

open access: yesPLoS ONE, 2015
Phylogenetic profiling, a network inference method based on gene inheritance profiles, has been widely used to construct functional gene networks in microbes. However, its utility for network inference in higher eukaryotes has been limited.
Junha Shin, Insuk Lee
doaj   +1 more source

Behavior of replication origins in Eukaryota – spatio-temporal dynamics of licensing and firing [PDF]

open access: yesCell Cycle, 2015
Although every organism shares some common features of replication, this process varies greatly among eukaryotic species. Current data show that mathematical models of the organization of origins based on possibility theory may be applied (and remain accurate) in every model organism i.e. from yeast to humans.
Marcelina W, Musiałek, Dorota, Rybaczek
openaire   +2 more sources

Distinct Defence Mechanisms of Allelopathic Rice Against Quinclorac‐Susceptible and ‐Resistant Barnyardgrass: Involvement of Specific Metabolites and Rhizosheath Microbiota

open access: yesPlant Biotechnology Journal, EarlyView.
ABSTRACT Allelopathic rice is increasingly recognised as a promising strategy for sustainable weed management. Resistance to the herbicide quinclorac is widespread in barnyardgrass, but it remains unclear whether allelopathic rice exerts the same defence against herbicide‐susceptible and ‐resistant barnyardgrass. We conducted integrated transcriptomic,
Shuyan Li   +5 more
wiley   +1 more source

Addition of plant-growth-promoting Bacillus subtilis PTS-394 on tomato rhizosphere has no durable impact on composition of root microbiome

open access: yesBMC Microbiology, 2017
Background Representatives of the genus Bacillus are increasingly used in agriculture to promote plant growth and to protect against plant pathogens. Unfortunately, hitherto the impact of Bacillus inoculants on the indigenous plant microbiota has been ...
Junqing Qiao   +5 more
doaj   +1 more source

Automatic generation of pseudoknotted RNAs taxonomy

open access: yesBMC Bioinformatics, 2023
Background The ability to compare RNA secondary structures is important in understanding their biological function and for grouping similar organisms into families by looking at evolutionarily conserved sequences such as 16S rRNA. Most comparison methods
Michela Quadrini   +2 more
doaj   +1 more source

Together Is Better: The Rumen Microbial Community as Biological Toolbox for Degradation of Synthetic Polyesters

open access: yesFrontiers in Bioengineering and Biotechnology, 2021
Microorganisms, like bacteria and fungi, are becoming an emerging resource for the development of eco-sustainable plastic degradation and recycling processes.
Felice Quartinello   +13 more
doaj   +1 more source

Evolutionary modes in protein observable space: the case of Thioredoxins [PDF]

open access: yes, 2019
In this article, we investigated the structural and dynamical evolutionary behaviour of a set of ten thioredoxin proteins as formed by three extant forms and seven resurrected ones in laboratory.
Alba, Josephine   +3 more
core   +1 more source

SwarmGenomics: A Unified Pipeline for Individual‐Based Whole‐Genome Analyses

open access: yesMolecular Ecology Resources, Volume 26, Issue 3, April 2026.
ABSTRACT Advances in sequencing technologies have made whole‐genome data widely accessible, enabling research in population genetics, evolutionary biology, and conservation. However, analysing whole‐genome sequencing (WGS) data remains challenging, often requiring multiple specialised tools and substantial bioinformatics expertise.
Aure Kylmänen   +5 more
wiley   +1 more source

Active Microbiome Structure and Functional Analyses of Freshwater Benthic Biofilm Samples Influenced by RNA Extraction Methods

open access: yesFrontiers in Microbiology, 2021
Advances in high-throughput sequencing technologies have enabled extensive studies of freshwater biofilms and significant breakthroughs in biofilm meta-omics.
Yuan Yao   +3 more
doaj   +1 more source

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