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Region-Based Analysis with Functional Annotation Identifies Genes Associated with Cognitive Function in South Asians from India. [PDF]
Genes (Basel)Abu-Amara H +13 more
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TrAnnoScope: A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation. [PDF]
Genes (Basel)Pektas A, Panitz F, Thomsen B.
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Annotated functional decomposition
Computer Applications in Engineering Education, 2021AbstractExperiences gained from the domain‐specific courses showed that students focus mostly on how to implement solutions and less on what must be considered within the solution. In the case of information systems‐related courses, students focus on system development using specific languages and frameworks while often disregard the required logical ...
Stefan Tubic +3 more
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Functional annotation of noncoding sequence variants [PDF]
Nature Methods, 2014 Identifying functionally relevant variants against the background of ubiquitous genetic variation is a major challenge in human genetics. For variants in protein-coding regions, our understanding of the genetic code and splicing allows us to identify likely candidates, but interpreting variants outside genic regions is more difficult.
Graham R S Ritchie +2 more
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Functional Annotation of Custom Transcriptomes
2022Many eukaryotic genes can give rise to different alternative transcripts depending on stage of development, cell type, and physiological cues. Current transcriptome-wide sequencing technologies highlight the remarkable extent of this regulation in metazoans and allow for RNA isoforms to be profiled in increasingly small biological samples and with a ...
Fursham Hamid +3 more
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An In-Browser Collaborative System for Functional Annotations
25th International Database Engineering & Applications Symposium, 2021In this work, we used the Web IndeX system, which converts words into hyperlinks in arbitrary Web pages, to implement a system for sharing annotations registered on keywords within a limited group. This system allows group members to view all the written annotations by simply mousing over the keyword when it appears on a web page, facilitating sharing ...
Yui Saeki, Motomichi Toyama
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Pseudouridine Identification and Functional Annotation with PIANO
2023Pseudouridine (Ψ) is the first-discovered RNA modification abundantly present in many classes of RNAs, which plays a pivotal role in a series of biological processes. Accurately identifying the location of Ψ sites is helpful for relevant downstream researches.
Jiahui, Yao +4 more
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Protein Functional Annotation by Homology
2008Genome sequencing projects have resulted in a rapid accumulation of predicted protein sequences. With experimentally verified information on protein function lagging far behind, computational methods are used for functional annotation of proteins. Here we describe a number of protocols for protein sequence and structure analysis that can be used to ...
Raja, Mazumder +2 more
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Automatic annotation of protein function
Current Opinion in Structural Biology, 2005The annotation of protein function at genomic scale is essential for day-to-day work in biology and for any systematic approach to the modeling of biological systems. Currently, functional annotation is essentially based on the expansion of the relatively small number of experimentally determined functions to large collections of proteins.
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