Results 1 to 10 of about 484,203 (191)

Sex-biased mouse liver lincRNAs: validation and impact of mouse knockout models that perturb hepatic growth signaling [PDF]

open access: yes, 2016
Sexual dimorphism has a broad impact on human health and disease, including autoimmune diseases, cardiovascular diseases, and liver diseases, specifically hepatocellular carcinoma.
Yilmaz, Feyza
core   +1 more source

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae

open access: yesBMC Microbiology, 2009
Background Magnaporthe oryzae, the causal agent of blast disease of rice, is the most destructive disease of rice worldwide. The genome of this fungal pathogen has been sequenced and an automated annotation has recently been updated to Version 6 http ...
Deng Jixin   +7 more
doaj   +1 more source

AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system [PDF]

open access: yes, 2006
We have implemented a genome annotation system for prokaryotes called AGMIAL. Our approach embodies a number of key principles. First, expert manual annotators are seen as a critical component of the overall system; user interfaces were cyclically ...
Bessières, P.   +10 more
core  

Genome Composition and Divergence of the Novel Coronavirus (2019-nCoV) Originating in China. [PDF]

open access: yes, 2020
An in-depth annotation of the newly discovered coronavirus (2019-nCoV) genome has revealed differences between 2019-nCoV and severe acute respiratory syndrome (SARS) or SARS-like coronaviruses.
Cheng, Genhong   +15 more
core  

Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales

open access: yesBMC Genomics, 2017
Background Coniophora olivacea is a basidiomycete fungus belonging to the order Boletales that produces brown-rot decay on dead wood of conifers. The Boletales order comprises a diverse group of species including saprotrophs and ectomycorrhizal fungi ...
Raúl Castanera   +11 more
doaj   +1 more source

Genome Annotation

open access: yes
The hallmark of genome sequencing projects is to provide genetic information on a species with functional annotations of genes and proteins. This process heavily relies on genome annotation based on homology detections from previously known genomic data.
openaire   +3 more sources

Whole-Genome Annotation with BRAKER [PDF]

open access: yes, 2019
BRAKER is a pipeline for highly accurate and fully automated gene prediction in novel eukaryotic genomes. It combines two major tools: GeneMark-ES/ET and AUGUSTUS. GeneMark-ES/ET learns its parameters from a novel genomic sequence in a fully automated fashion; if available, it uses extrinsic evidence for model refinement.
Katharina J, Hoff   +3 more
openaire   +2 more sources

A Snapshot of the Emerging Tomato Genome Sequence

open access: yesThe Plant Genome, 2009
The genome of tomato ( L.) is being sequenced by an international consortium of 10 countries (Korea, China, the United Kingdom, India, the Netherlands, France, Japan, Spain, Italy, and the United States) as part of the larger “International Solanaceae ...
Lukas A. Mueller   +139 more
doaj   +1 more source

VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank

open access: yesBMC Bioinformatics, 2019
Background With sequencing technologies becoming cheaper and easier to use, more groups are able to obtain whole genome sequences of viruses of public health and scientific importance.
Ryan C. Shean   +4 more
doaj   +1 more source

Unsupervised Classification for Tiling Arrays: ChIP-chip and Transcriptome

open access: yes, 2011
Tiling arrays make possible a large scale exploration of the genome thanks to probes which cover the whole genome with very high density until 2 000 000 probes.
Aubourg, Sébastien   +4 more
core   +3 more sources

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