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Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni). [PDF]
PLoS ONEThe northern white rhinoceros (Ceratotherium simum cottoni) genome and annotation were previously published, but the annotation contained few genes, with many annotation misalignments, and nomenclature not matching HGNC/VGNC naming conventions, making ...
Elena Ruggeri +4 more
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Apollo: Democratizing genome annotation.
PLoS Computational Biology, 2019 Genome annotation is the process of identifying the location and function of a genome's encoded features. Improving the biological accuracy of annotation is a complex and iterative process requiring researchers to review and incorporate multiple sources ...
Nathan A Dunn +9 more
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Capturing heart valve development with Gene Ontology
Frontiers in Genetics, 2023 Introduction: The normal development of all heart valves requires highly coordinated signaling pathways and downstream mediators. While genomic variants can be responsible for congenital valve disease, environmental factors can also play a role. Later in
Saadullah H. Ahmed +4 more
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Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes
Insects, 2021 Genome sequencing of a diverse array of arthropod genomes is already underway, and these genomes will be used to study human health, agriculture, biodiversity, and ecology.
Surya Saha +4 more
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Annotation of the Arabidopsis Genome [PDF]
Plant Physiology, 2003 The Arabidopsis Genome Sequencing Project was officially completed in late 2000, leading to the publication of a landmark paper describing, in broad outline, many salient features of the Arabidopsis genome ([Arabidopsis Genome Initiative [AGI], 2000][1]).
Jennifer R, Wortman +11 more
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Functional genome Annotation in Bacterial infections: A Review [PDF]
Al Ameen Journal of Medical Sciences, 2021 Functional annotation provides the information of gene about its biological identity and various types of molecular function and biological role like sub-cellular location and its expression.
Sharique Ahmad +3 more
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Evaluation of three automated genome annotations for Halorhabdus utahensis. [PDF]
PLoS ONE, 2009 Genome annotations are accumulating rapidly and depend heavily on automated annotation systems. Many genome centers offer annotation systems but no one has compared their output in a systematic way to determine accuracy and inherent errors. Errors in the
Peter Bakke +12 more
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Welcome to the big leaves: Best practices for improving genome annotation in non‐model plant genomes
Applications in Plant Sciences, 2023 Premise Robust standards to evaluate quality and completeness are lacking in eukaryotic structural genome annotation, as genome annotation software is developed using model organisms and typically lacks benchmarking to comprehensively evaluate the ...
Vidya S. Vuruputoor +10 more
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Best Practices for Comprehensive Annotation of Neuropeptides of Gryllus bimaculatus
Insects, 2023 Genome annotation is critically important data that can support research. Draft genome annotations cover representative genes; however, they often do not include genes that are expressed only in limited tissues and stages, or genes with low expression ...
Takako Mochizuki +8 more
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Progress, challenge and prospect of plant plastome annotation
Frontiers in Plant Science, 2023 The plastome (plastid genome) represents an indispensable molecular data source for studying phylogeny and evolution in plants. Although the plastome size is much smaller than that of nuclear genome, and multiple plastome annotation tools have been ...
Xiao-Jian Qu +6 more
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