Results 21 to 30 of about 1,440,487 (305)

RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes

Genomics, Proteomics & Bioinformatics, 2018
The rapid development of high-throughput sequencing technologies has led to a dramatic decrease in the money and time required for de novo genome sequencing or genome resequencing projects, with new genome sequences constantly released every week.
Wanfei Liu, Shuangyang Wu, Qiang Lin, Shenghan Gao, Feng Ding, Xiaowei Zhang, Hasan Awad Aljohi, Jun Yu, Songnian Hu   +8 more
doaj   +1 more source

Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans [PDF]

, 2011
The genomes of numerous parasitic nematodes are currently being sequenced, but their complexity and size, together with high levels of intra-specific sequence variation and a lack of reference genomes, makes their assembly and annotation a challenging ...
Gilleard John S., Protasio Anna V., Anna V Protasio, Laing Roz, Jackson Frank, Hunt, M., Steven Laing, Beech, R., Laing, S., Frank Jackson, Mungall, K., Michael Quail, Saunders Gary, Hunt Martin, Gilleard, J.S., Quail Michael, Mungall Karen, Berriman, M., Gary Saunders, Anna V. Protasio, Laing Steven, Beech Robin, Martin Hunt, Robin Beech, Saunders, G., Jackson, F., Karen Mungall, Quail, M., Matthew Berriman, Roz Laing, Laing, R., John S Gilleard, John S. Gilleard, Protasio, A.V., Berriman Matthew   +34 more
core   +1 more source

Status of genome function annotation in model organisms and crops

Plant Direct, 2023
Since the entry into genome‐enabled biology several decades ago, much progress has been made in determining, describing, and disseminating the functions of genes and their products.
Bo Xue, Seung Y. Rhee
doaj   +1 more source

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade [PDF]

, 2012
Background The structural and functional annotation of genomes is now heavily based on data obtained using automated pipeline systems. The key for an accurate structural annotation consists of blending similarities between closely related genomes with ...
Christie-Oleza Joseph A, Miotello, Guylaine, Joseph A Christie-Oleza, Jean Armengaud, Armengaud, J., Armengaud, Jean, Guylaine Miotello, Miotello Guylaine, Christie-Oleza, Joseph Alexander, Armengaud Jean, Christie-Oleza, Joseph A   +10 more
core   +1 more source

Genome annotation for clinical genomic diagnostics: strengths and weaknesses

Genome Medicine, 2017
The Human Genome Project and advances in DNA sequencing technologies have revolutionized the identification of genetic disorders through the use of clinical exome sequencing.
Charles A. Steward, Alasdair P. J. Parker, Berge A. Minassian, Sanjay M. Sisodiya, Adam Frankish, Jennifer Harrow   +5 more
doaj   +1 more source

Improvements to the Gulf pipefish Syngnathus scovelli genome

GigaByte, 2023
The Gulf pipefish Syngnathus scovelli has emerged as an important species for studying sexual selection, development, and physiology. Comparative evolutionary genomics research involving fishes from Syngnathidae depends on having a high ...
Balan Ramesh , Clay M. Small , Hope Healey , Bernadette Johnson , Elyse Barker , Mark Currey , Susan Bassham , Megean Myers , William A. Cresko , Adam Gregory Jones   +9 more
doaj   +1 more source

AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system [PDF]

, 2006
We have implemented a genome annotation system for prokaryotes called AGMIAL. Our approach embodies a number of key principles. First, expert manual annotators are seen as a critical component of the overall system; user interfaces were cyclically ...
Loux, Valentin, S. Chaillou, Hoebeke, Mark,, Maguin, Emmanuelle, K. Bryson, Loux, V., Chaillou, Stéphane, Bessières, P., Bessières, Philippe, Chaillou, Stephane,, Gibrat, J.-F., M. Van De Guchte, Chaillou, S., Gibrat, Jean-François, Hoebeke, M., Penaud, Stéphanie, van de Guchte, M., van de Guchte, Maarten,, Maguin, E., E. Maguin, Penaud, S., P. Nicolas, M. Hoebeke, van de Guchte, Maarten, Bossy, Robert,, Bryson, K., S. Penaud, V. Loux, Bossy, R., Bossy, Robert, R., R. Bossy, Hoebeke, Mark, J-f Gibrat, Nicolas, P.   +33 more
core   +1 more source

Galaxy Genome Annotation: Galaxy as a platform for the annotation of genomes

, 2023
Galaxy Genome Annotation (GGA) is a project focusing on developments and resources to turn Galaxy into a complete and efficient platform for the structural and functional annotation of genome sequences. In this talk, we will present an update on the material produced by the GGA community in the last years on this topic.
Bretaudeau, Anthony, Rasche, Helena
openaire   +1 more source

The Capsaspora genome reveals a complex unicellular prehistory of animals [PDF]

, 2013
To reconstruct the evolutionary origin of multicellular animals from their unicellular ancestors, the genome sequences of diverse unicellular relatives are essential. However, only the genome of the choanoflagellate Monosiga brevicollis has been reported
Chen, Zehua, Kerner, Pierre, Ruiz-Trillo, Iñaki, Vervoort, Michel, Sánchez-Pons, Núria, Russ, Carsten, Kramer, Eric, Carr, Martin, Roger, Andrew J., Suga, Hiroshi, Nusbaum, Chad, de Mendoza, Alex, Haas, Brian J., Lang, B. Franz, Manning, Gerard, Sebé-Pedrós, Arnau, Torruella, Guifré, Derelle, Romain, Brown, Matthew W., Mendoza, Alex de   +19 more
core   +1 more source

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

Viruses, 2010
Improvements in DNA sequencing technologies portend a new era in virology and could possibly lead to a giant leap in our understanding of viral evolution and ecology.
Qiandong Zeng, William Klimke, Peter Sterk, Susmita Shrivastava, Ramana Madupu, Richard H. Scheuermann, Seth Schobel, Donald Seto, Yiming Bao, Carla Kuiken, Elliot J. Lefkowitz, Philippe Le Mercier, Raphael Leplae, Tatiana Tatusova, James Rodney Brister   +14 more
doaj   +1 more source