Results 11 to 20 of about 1,440,487 (305)
The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes [PDF]
Nucleic Acids Research, 2005 The release of the 1000th complete microbial genome will occur in the next two to three years. In anticipation of this milestone, the Fellowship for Interpretation of Genomes (FIG) launched the Project to Annotate 1000 Genomes. The project is built around the principle that the key to improved accuracy in high-throughput annotation technology is to ...Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, Crécy-Lagard, Valérie de, Diaz, Naryttza N., Disz, Terry, Edwards, Robert, Fonstein, Michael, Frank, Ed D., Gerdes, Svetlana, Glass, Elizabeth M., Goesmann, Alexander, Hanson, Andrew, Iwata-Reuyl, Dirk, Jensen, Roy, Jamshidi, Neema, Krause, Lutz, Kubal, Michael, Larsen, Niels, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Neuweger, Heiko, Olsen, Gary, Olson, Robert, Osterman, Andrei, Portnoy, Vasiliy, Pusch, Gordon D., Rodionov, Dmitry A., Rückert, Christian, Steiner, Jason, Stevens, Rick, Thiele, Ines, Vassieva, Olga, Ye, Yuzhen, Zagnitko, Olga, Vonstein, Veronika +39 moreopenaire +10 more sourcesGenDB - an open source genome annotation system for prokaryote genomes [PDF]
, 2003 Meyer F, Goesmann A, McHardy AC, et al. GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research.Rupp, Oliver, Bartels, Daniela, Linke, Burkhard, McHardy, Alice C., Goesmann, Alexander ; https://orcid.org/, Bekel, Thomas, Kalinowski, Jörn, Giegerich, Robert, Pühler, Alfred ; https://orcid.org/, Meyer, Folker, Clausen, Jörn +10 morecore +1 more sourceExploiting proteomic data for genome annotation and gene model validation in Aspergillus niger [PDF]
, 2009 Background Proteomic data is a potentially rich, but arguably unexploited, data source for genome annotation. Peptide identifications from tandem mass spectrometry provide prima facie evidence for gene predictions and can discriminate over a set of ...Simon J Gaskell, Francis-McIntyre, Sue, Gaskell, Simon J., Sue Francis-McIntyre, Sugden Deana, Wright, JC, Robert J Beynon, James C Wright, Baker, Scott E., Beynon, RJ, Wright James C, Riba-Garcia Isabel, Gaskell, SJ, Igor V Grigoriev, Simon J Hubbard, Scott E Baker, Francis-McIntyre, S, Hubbard Simon J, Riba Garcia, Isabel, Wright, James C., Sugden, D, Riba-Garcia, I, Sugden, Deana, Hubbard, Simon J.; id_orcid, Hubbard, SJ, Grigoriev Igor V, Gaskell Simon J, Baker Scott E, Isabel Riba-Garcia, Grigoriev, IV, Beynon, Robert J., Deana Sugden, Baker, SE, Beynon Robert J, Grigoriev, Igor V., Francis-McIntyre Sue +35 morecore +1 more sourceThe Rice Annotation Project Database (RAP-DB): 2008 update [PDF]
, 2008 The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be ...Raghuvanshi S, Hosokawa, S., SMITH-WHITE, B, Zhao, Q., An, G., Tateno, Y., Imanishi, T., Nobushima, S., SUZUKI, M, NOBUTA, K, Oota, S., Tatusova T, Nakaoka, H., Lu, C., Shinso Y, Takeda, J.-i., Todokoro F, Yamamoto, N., Khurana, J.P., OOta S, Tanaka, T., Kim, H., Sakai, Y., Piegu B, Ito, Y., Hosokawa S, Bruskiewich, R. M., Kubooka H, Harada, E., Messing, J., Lin, Yao-Cheng, HAN, B, Meyers BC, Wei, F-J, Koyanagi, K. O., Sakai, H., Ikeo K, Ohyanagi, H., IKAWA, H, Meyers, B.C., Barrero, R.A., Aono R, Okido, T., Zuccolo, A., HARADA, E, KOYANAGI, KO, Green PJ, Sasaki T, Sato Y, Bureau TE, Nobuta, K., Barrero, R. A., Yamasaki C, Shibata, M., NUMA, H, Zhao Q, Christie, K.R., Lieberherr, D., Kanno M, Panaud O, Bureau, T.E., Souvorov A, MESSING, J, An, G., Messing J, KIM, H, Hsing, Y-i, PIEGU, B, Lonsdale, D., MEYERS, BC, Bin, H., Ito, Y., HABERER, G, Tanino M, BRUSKIEWICH, RM, Aono, R., Namiki, N., Green, P. J., Sanbonmatsu, R., SAKAI, Y, Fujisawa, M., Zuccolo, A., HABARA, T, Shinso, Y., Fujisawa, M., Ohyanagi, H., Yamasaki, C., HOEN, DR, Christie, K. R., Yamaguchi, K., Kramer, M. R., SHIBATA, M, Kubooka, H., Tada, M., Echeverria M., GREEN, PJ, Yamamoto, N., OOta, S., TANAKA, T, Hoen, D. R., Numa H, LONSDALE, D, An, S., Piegu, B., McCombie RW, Echeverria, M., SAKAI, H, Tateno Y, Habara, T., Ikawa, H., TYAGI, AK, Koyanagi, K.O., Itoh T, Gojobori, T., Harada, E., Raghuvanshi, S., Bureau, T. E., Hosokawa, S., Lin YC, Kramer MR, ANTONIO, BA, Yamamoto, M., Apweiler R, Kubooka, H., TATUSOVA, T, Kawahara Y, Suzuki M, TAKEDA, JI, Lonsdale, D., Antonio BA, Sanbonmatsu, R., Shinso, Y., KHURANA, JP, IMANISHI, T, Kanno, M., Tatusova, T., Hsing YI, FUJISAWA, M, Haberer, G., Numa, H., Yamaguchi, K., Ikeo, K., Todokoro, F., Ikeo, K., Chaparro, C., Singh, N. K., ECHEVERRIA, M, Smith-White, B., Ohyanagi H, Nagamura, Y., Wei, F. J., Wing, R. A., Habara T, NAKAOKA, H, PANAUD, O, WEI, FJ, Fujii, Y., Fuks G, Namiki N, Kikuchi, S., KRAMER, MR, MATSUYA, A, KAWASHIMA, H, Tanino, M., Whitfield, E.J., Christie KR, Harada E, Okido T, Todokoro, F., Saichi N, Singh, N.K., Sasaki, T., Numa, H., Sakata K, NOBUSHIMA, S, MCCOMBIE, RW, Kawashima, H., Kawahara, Y., Zhao, Q., Haberer, G., Bruskiewich, R.M., NAMIKI, N, IKEO, K, Ikawa, H., Nobuta K, Nakaoka H, Piegu, B., Tanino, M., Tateno, Y., KUBOOKA, H, Tanaka, T., HSING, YI, Antonio, B. A., Kim, H-R, SATO, Y, An G, Saichi, N., Suzuki, M., CHRISTIE, KR, Fuks, G., Barrero RA, APWEILER, R, Sato, Y., Tyagi, A. K., ITO, Y, YAMASAKI, C, FUKS, G, AONO, R, YAMAMOTO, M, YAMAMOTO, N, TADA, M, O'Donovan, C. C., TODOKORO, F, Kim H, WU, J, ZUCCOLO, A, OKIDO, T, Shibata M, Matsuya, A., McCombie, R. W., Koyanagi KO, HOSOKAWA, S, Apweiler, R., Chaparro C, BARRERO, RA, Tanaka T, Nobuta, K., Fujii, Y., Tyagi AK, SANBONMATSU, R, SAKATA, K, An S, Echeverria, M., Sakai, H., Tatusova, T., Fujisawa M, Sakata, K., Kawashima H, Lin, Y. C., WING, RA, OOTA, S, Wu, J., Habara, T., Whitfield EJ, LU, C, An, S., Lin, Y-C, Wu, J., Hoen DR, O'DONOVAN, CC, Han B, SHINSO, Y, Smith White B, Whitfield, E. J., Okido, T., Green, P.J., TATENO, Y, KIKUCHI, S, Kawahara, Y., Apweiler, R., Wu J, Kramer, M.R., Kikuchi S, Matsumoto, T., Kawashima, H., Hoen, D.R., Ito Y, Nobushima S, ZHAO, Q, SASAKI, T, Souvorov, A., Tada, M., Sakai, Y., LIEBERHERR, D, Sanbonmatsu R, McCombie, R.W., Fujii Y, Matsuya, A., Fuks, G., Lieberherr, D., Lieberherr D, Antonio, B.A., Ikawa H, Sakata, K., Raghuvanshi, S., MATSUMOTO, T, SAICHI, N, Nobushima, S., Yamamoto N, Gojobori T, Sakai Y, Yamamoto M, Singh NK, Hsing, Y. I., Smith-White, B., Lu C, NAGAMURA, Y, Khurana, J. P., AN, S, Tada M, Souvorov, A., Shibata, M., O'Donovan CC, Sakai H, KANNO, M, Nagamura Y, FUJII, Y, KAWAHARA, Y, Kikuchi, S., AN, G, Sasaki, T., Meyers, B. C., YAMAGUCHI, K, Suzuki, M., Han, B., ZUCCOLO, ANDREA, CHAPARRO, C, Bruskiewich RM, Chaparro, C., Aono, R., SOUVOROV, A, Nakaoka, H., O’Donovan, C.C., OHYANAGI, H, Yamasaki, C., Imanishi T, Lonsdale D, TANINO, M, BUREAU, TE, Lu, C., Panaud, O., Yamaguchi K, Kanno, M., Wing, R.A., Sato, Y., Matsumoto T, ITOH, T, GOJOBORI, T, Panaud, O., Messing, J., Haberer G, Saichi, N., Matsuya A, Wing RA, Khurana JP, Tyagi, A.K., Namiki, N., Itoh, T., Itoh, T., Imanishi, T., SINGH, NK, Matsumoto, T., Nagamura, Y., Yamamoto, M., RAGHUVANSHI, S, Takeda, J. I., Wei FJ, Takeda J, WHITFIELD, EJ, Gojobori, T. +359 morecore +1 more sourceCurated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana [PDF]
, 2007 We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates were manually curated.Hosokawa, S., Kawashima, H., Zhao, Q., Kawahara, Y., Zhao, Q., Imanishi, T., Haberer, G., Seki, M., Komatsu, S., Thongjuea, S., Oota, S., Wang, A., Takeda, J.-i., Bureau, T., Ikawa, H., Hokari, H., Zhang, H., Schoof, H., Yamamoto, N., Khurana, J.P., Tanaka, T., Tanino, M., Thongjuea, S., Sakai, Y., Ito, Y., Tanaka, T., Kawamura, T., Antonio, B. A., Harada, E., Messing, J., Saichi, N., Fuks, G., Hirochika, H., Koyanagi, K. O., Sato, Y., Sakai, H., Tyagi, A. K., Bureau, T., Kawamura, T., Aono, H., Ohyanagi, H., Burr, B., Barrero, R.A., Okido, T., Tsugane, M., Shimizu, Y., Osato, N., Hilton, P.B., Wang, A., Yu, Y., Hoen, D., Matsuya, A., Barrero, R. A., Bruskiewich, R., Nam, J., Apweiler, R., Shibata, M., Miyao, A., Miyao, A., Schoof, H., Fujii, Y., Quetier, F., Lieberherr, D., Nurimoto, S., Burr, B., Hiraki, A.T., Sakai, H., Tatusova, T., Hoen, D., Sakata, K., Sato, F., Lin, Y. C., Sakurai, T., Higo, K., Lonsdale, D., Nurimoto, S., Hiraki, A. T., Habara, T., Shimizu, Y., Ito, Y., Lin, Y-C, Tsugane, M., McCombie, W. R., Okido, T., Namiki, N., Kawahara, Y., Apweiler, R., Mulder, N., Kawashima, H., Matsumoto, T., Quetier, F., Osato, N., Hsing, Y., Hilton, P. B., Shinso, Y., Aono, H., Ohyanagi, H., Yamasaki, C., Sakai, Y., Yamaguchi, K., Vanavichit, A., Kubooka, H., O'Donovan, C., Komatsu, S., Matsuya, A., Fuks, G., Lieberherr, D., Antonio, B.A., Yamamoto, N., OOta, S., Hokari, H., Sakata, K., Raghuvanshi, S., Jaiswal, P., Burr, F., Hsing, Y. I., Smith-White, B., Khurana, J. P., O'Donovan, C., Vanavichit, A., De Oliveira, A. C., Habara, T., Ikawa, H., Shibata, M., Bruskiewich, R., Koyanagi, K.O., Gojobori, T., Harada, E., Raghuvanshi, S., Hosokawa, S., Sato, F., Seki, M., Higo, K., Yamamoto, M., Palmer, L.E., Kubooka, H., Kikuchi, S., Sasaki, T., Yu, Y., Han, B., Nam, J., Costa de Oliveira, A., Palmer, L. E., Lonsdale, D., McCombie, W.R., Shinso, Y., Kanno, M., Tatusova, T., Yamasaki, C., Haberer, G., Numa, H., Yamaguchi, K., Hirochika, H., Ikeo, K., Ikeo, K., Todokoro, F., Burr, F., Zhang, H., Singh, N. K., Kanno, M., Smith-White, B., Wing, R.A., Sato, Y., Nagamura, Y., Wing, R. A., Fujii, Y., Jaiswal, P., Messing, J., Kikuchi, S., Saichi, N., Namiki, N., Tyagi, A.K., Itoh, T., Tanino, M., Itoh, T., Imanishi, T., Sakurai, T., Todokoro, F., Mulder, N., Matsumoto, T., Singh, N.K., Nagamura, Y., Yamamoto, M., Shinozaki, K., Takeda, J. I., Han, B., Sasaki, T., Numa, H., Shinozaki, K., Gojobori, T. +189 morecore +1 more sourceImproved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-seq and ESTs [PDF]
, 2014 The reference annotations made for a genome sequence provide the framework for all subsequent analyses of the genome. Correct and complete annotation in addition to the underlying genomic sequence is particularly important when interpreting the results ...Junfang Song, Geoffrey J Barton, Schurch Nicholas J., Brown, Sara J., Gordon G Simpson, Nicholas J Schurch, McLean, W. H. Irwin, Song Junfang, Simpson Gordon G., Sherstnev, Alexander, Brown Sara J., Alexander Sherstnev, Song, Junfang, McLean W. H. Irwin, Duc, Celine, Kate G Storey, Storey, Kate G., Schurch, Nicholas J., Cole Christian, Sherstnev Alexander, Simpson, Gordon G., Céline Duc, W H Irwin McLean, Cole, Christian; id_orcid, Christian Cole, Barton Geoffrey J., Sara J Brown, Duc Céline, Barton, Geoffrey J.; id_orcid, Storey Kate G. +29 morecore +1 more source
