Results 41 to 50 of about 1,440,487 (305)

Assessment of the impact of manual curation in BioCyc

open access: yesFrontiers in Bioinformatics
IntroductionBioCyc is an extensive collection of databases of genomic and pathway information for microorganisms and model eukaryotes. These organismal databases integrate diverse biological data by combining computationally inferred information, data ...
R. Caspi   +6 more
doaj   +1 more source

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

open access: yesBMC Bioinformatics, 2011
Background Second-generation sequencing technologies are precipitating major shifts with regards to what kinds of genomes are being sequenced and how they are annotated.
Holt Carson, Yandell Mark
doaj   +1 more source

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea [PDF]

open access: yes, 2014
Background: Brassica oleracea is a valuable vegetable species that has contributed to human health and nutrition for hundreds of years and comprises multiple distinct cultivar groups with diverse morphological and phytochemical attributes.
John Nixon   +83 more
core   +1 more source

Tips for improving genome annotation quality

open access: yesGenomics Communications
With the advancement of sequencing technology and genome assembly algorithms, we can easily obtain high-quality genome assembly results, however, the remaining challenge is accurate genome annotation. As the cornerstone for downstream analysis, there are
Lan Lan   +6 more
doaj   +1 more source

Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage

open access: yesmSystems, 2020
Prokaryotic genome annotation is heavily dependent on automated gene annotation pipelines that are prone to propagate errors and underestimate genome complexity.
Patrick Willems   +2 more
doaj   +1 more source

Correction of the Caulobacter crescentus NA1000 genome annotation. [PDF]

open access: yesPLoS ONE, 2014
Bacterial genome annotations are accumulating rapidly in the GenBank database and the use of automated annotation technologies to create these annotations has become the norm.
Bert Ely, LaTia Etheredge Scott
doaj   +1 more source

Complete genome sequencing of Bacillus cabrialesii TE3T: A plant growth-promoting and biological control agent isolated from wheat (Triticum turgidum subsp. durum) in the Yaqui Valley

open access: yesCurrent Research in Microbial Sciences, 2023
Bacillus cabrialesii TE3T is a strictly aerobic and Gram-stain-positive plant growth-promoting bacterium, motile and catalase-positive. In addition, strain TE3T was also recently described as a biological control agent.
Valeria Valenzuela Ruiz   +5 more
doaj   +1 more source

Genome-wide view of splice junctions in rice in Genome annotation versus RNA-seq Dataset.

open access: yes, 2022
Genome-wide view of splice junctions in rice in Genome annotation versus RNA-seq Dataset.
Yanxiao Jia (6569447)   +8 more
core   +1 more source

The genome sequence of the common frog, Rana temporaria Linnaeus 1758 [version 1; peer review: 2 approved]

open access: yesWellcome Open Research, 2021
We present a genome assembly from an individual female Rana temporaria (the common frog; Chordata; Amphibia; Anura; Ranidae). The genome sequence is 4.11 gigabases in span.
Jeffrey W. Streicher
doaj   +1 more source

Genome sequence of the pea aphid Acyrthosiphon pisum [PDF]

open access: yes, 2010
Aphids are important agricultural pests and also biological models for studies of insect-plant interactions, symbiosis, virus vectoring, and the developmental causes of extreme phenotypic plasticity.
Fenton, Brian   +783 more
core   +1 more source

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