Results 51 to 60 of about 484,203 (191)

Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage

mSystems, 2020
Prokaryotic genome annotation is heavily dependent on automated gene annotation pipelines that are prone to propagate errors and underestimate genome complexity.
Patrick Willems, Igor Fijalkowski, Petra Van Damme   +2 more
doaj   +1 more source

Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA). [PDF]

, 2010
Alicyclobacillus acidocaldarius (Darland and Brock 1971) is the type species of the larger of the two genera in the bacillal family 'Alicyclobacillaceae'. A.
Brettin, Thomas, Bristow, Jim, Bruce, David, Chain, Patrick, Chang, Yun-Juan, Chen, Amy, Chen, Feng, Cheng, Jan-Fang, Chertkov, Olga, Copeland, Alex, Detter, John C, Eisen, Jonathan A, Glavina Del Rio, Tijana, Goodwin, Lynne, Göker, Markus, Han, Cliff, Hauser, Loren, Hugenholtz, Philip, Ivanova, Natalia, Jeffries, Cynthia D, Klenk, Hans-Peter, Kyrpides, Nikos C, Land, Miriam, Lapidus, Alla, Lucas, Susan, Markowitz, Victor, Mavromatis, Konstantinos, Meincke, Linda, Nolan, Matt, Ovchinnikova, Galina, Palaniappan, Krishna, Pati, Amrita, Pitluck, Sam, Pukall, Rüdiger, Rohde, Manfred, Sikorski, Johannes, Sims, David, Tice, Hope, Wahrenburg, Claudia   +38 more
core   +2 more sources

Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation

BMC Bioinformatics, 2007
Background Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects.
Mayer Klaus FX, Spannagl Manuel, Ernst Rebecca, Klee Kathrin   +3 more
doaj   +1 more source

TRAPID : an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes [PDF]

, 2013
Transcriptome analysis through next-generation sequencing technologies allows the generation of detailed gene catalogs for non-model species, at the cost of new challenges with regards to computational requirements and bioinformatics expertise.
Deforce, Dieter, Proost, Sebastian, Van Bel, Michiel, Van de Peer, Yves, Van Neste, Christophe, Vandepoele, Klaas   +5 more
core   +2 more sources

Scalable and versatile container-based pipelines for de novo genome assembly and bacterial annotation. [version 1; peer review: 2 approved, 1 approved with reservations]

F1000Research, 2023
Background: Advancements in DNA sequencing technology have transformed the field of bacterial genomics, allowing for faster and more cost effective chromosome level assemblies compared to a decade ago.
Tatiana Amabile de Campos, Georgios Joannis Pappas Jr, Felipe Marques de Almeida   +2 more
doaj   +1 more source

GNPAnnot: a community annotation system applied to sugarcane sequences : W745 [PDF]

, 2013
A large amount of data is being produced by current genome sequencing projects. Sequence annotations need to be organized into databases and widely accessible.
Bocs, Stéphanie, Charron, Carine, D'Hont, Angélique, Droc, Gaëtan, Garsmeur, Olivier, Guignon, Valentin, Ruiz, Manuel   +6 more
core  

Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing. [PDF]

, 2014
The mapping and functional analysis of quantitative traits in Brassica rapa can be greatly improved with the availability of physically positioned, gene-based genetic markers and accurate genome annotation.
Covington, Michael F, Devisetty, Upendra Kumar, Lekkala, Saradadevi, Maloof, Julin N, Tat, An V   +4 more
core   +1 more source

metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella [PDF]

, 2005
The metabolic SearcH And Reconstruction Kit (metaSHARK) is a new fully automated software package for the detection of enzyme-encoding genes within unannotated genome data and their visualization in the context of the surrounding metabolic network ...
McConkey, G.A., Pinney, J.W., Shirley, M.W., Westhead, D.R.   +3 more
core   +2 more sources

AnnoTrack - a tracking system for genome annotation

BMC Genomics, 2010
Background As genome sequences are determined for increasing numbers of model organisms, demand has grown for better tools to facilitate unified genome annotation efforts by communities of biologists. Typically this process involves numerous experts from
Hubbard Tim, Harrow Jennifer, Kokocinski Felix   +2 more
doaj   +1 more source

The genome sequence of the common toad, Bufo bufo (Linnaeus, 1758) [version 1; peer review: 2 approved]

Wellcome Open Research, 2021
We present a genome assembly from an individual male Bufo bufo (the common toad; Chordata; Amphibia; Anura; Bufonidae). The genome sequence is 5.04 gigabases in span. The majority of the assembly (99.1%) is scaffolded into 11 chromosomal pseudomolecules.
Jeffrey W. Streicher
doaj   +1 more source