VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. [PDF]
, 2011 VectorBase (http://www.vectorbase.org) is a NIAID-supported bioinformatics resource for invertebrate vectors of human pathogens. It hosts data for nine genomes: mosquitoes (three Anopheles gambiae genomes, Aedes aegypti and Culex quinquefasciatus), tick (
Campbell, David +13 more
core +5 more sources
BMC Genomics, 2019 Background The location and modular structure of eukaryotic protein-coding genes in genomic sequences can be automatically predicted by gene annotation algorithms.
Jeanne Wilbrandt +3 more
doaj +1 more source
A new reference genome assembly for the microcrustacean Daphnia pulex [PDF]
, 2017 Comparing genomes of closely related genotypes from populations with distinct demographic histories can help reveal the impact of effective population size on genome evolution. For this purpose, we present a high quality genome assembly of Daphnia pulex (
Ackerman, Matthew S +12 more
core +3 more sources
Improving eukaryotic genome annotation using single molecule mRNA sequencing
BMC Genomics, 2018 Background The advantages of Pacific Biosciences (PacBio) single-molecule real-time (SMRT) technology include long reads, low systematic bias, and high consensus read accuracy.
Vincent Magrini +9 more
doaj +1 more source
Tissue resolved, gene structure refined equine transcriptome. [PDF]
, 2017 BackgroundTranscriptome interpretation relies on a good-quality reference transcriptome for accurate quantification of gene expression as well as functional analysis of genetic variants.
Bellone, RR +9 more
core +1 more source
Whole genome sequence of Oscheius sp. TEL-2014 entomopathogenic nematodes isolated from South Africa
Genomics Data, 2016 We present the annotation of the draft genome sequence of Oscheius sp. TEL-2014 (Genbank accession number KM492926). This entomopathogenic nematode was isolated from grassland in Suikerbosrand Nature Reserve near Johannesburg in South Africa. Oscheius sp.
Tiisetso E. Lephoto +3 more
doaj +1 more source
PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family. [PDF]
, 2018 Plasmodium knowlesi has risen in importance as a zoonotic parasite that has been causing regular episodes of malaria throughout South East Asia. The P. knowlesi genome sequence generated in 2008 highlighted and confirmed many similarities and differences
Ay, F +11 more
core
A haplotype-resolved draft genome of the European sardine (Sardina pilchardus) [PDF]
, 2019 The European sardine (Sardina pilchardus Walbaum, 1792) is culturally and economically important throughout its distribution. Monitoring studies of sardine populations report an alarming decrease in stocks due to overfishing and environmental change ...
Canario, A.V.M. +7 more
core +1 more source
Annotating microbial functions with ProkFunFind
mSystemsAnalyzing microbial genomes has become an essential part of microbiology research, giving valuable insights into the functions and evolution of microbial species.
Keith Dufault-Thompson, Xiaofang Jiang
doaj +1 more source
BamView: visualizing and interpretation of next-generation sequencing read alignments. [PDF]
, 2012 So-called next-generation sequencing (NGS) has provided the ability to sequence on a massive scale at low cost, enabling biologists to perform powerful experiments and gain insight into biological processes.
Berriman, Matthew +5 more
core +1 more source