Results 1 to 10 of about 254,467 (221)

RNA sequencing analysis of the gametophyte transcriptome from the liverwort, Marchantia polymorpha. [PDF]

PLoS ONE, 2014
The liverwort Marchantia polymorpha is a member of the most basal lineage of land plants (embryophytes) and likely retains many ancestral morphological, physiological and molecular characteristics. Despite its phylogenetic importance and the availability
Niharika Sharma, Chol-Hee Jung, Prem L Bhalla, Mohan B Singh   +3 more
doaj   +1 more source

Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes

BMC Genomics, 2013
Background The green anole lizard, Anolis carolinensis, is a key species for both laboratory and field-based studies of evolutionary genetics, development, neurobiology, physiology, behavior, and ecology. As the first non-avian reptilian genome sequenced,
Eckalbar Walter L, Hutchins Elizabeth D, Markov Glenn J, Allen April N, Corneveaux Jason J, Lindblad-Toh Kerstin, Di Palma Federica, Alföldi Jessica, Huentelman Matthew J, Kusumi Kenro   +9 more
doaj   +1 more source

The complete chloroplast genome sequence of Dryobalanops aromatica

Mitochondrial DNA. Part B. Resources, 2021
Dryobalanops aromatica is a new species in the family of Lauraceae with high content of D-borneol, which is an important raw material of premium spices and medicine widely used in China.
Jihua Wang, Weizhong Huang, Shike Cai, Junliang Zhao   +3 more
doaj   +1 more source

Predicting metabolic pathways of plant enzymes without using sequence similarity: Models from machine learning

The Plant Genome, 2020
Most of the bioinformatics tools for enzyme annotation focus on enzymatic function assignments. Sequence similarity to well‐characterized enzymes is often used for functional annotation and to assign metabolic pathways.
Rodrigo de Oliveira Almeida, Guilherme Targino Valente   +1 more
doaj   +1 more source

Characterization of the transcriptome and EST-SSR development in Boea clarkeana, a desiccation-tolerant plant endemic to China [PDF]

PeerJ, 2017
Background Desiccation-tolerant (DT) plants can recover full metabolic competence upon rehydration after losing most of their cellular water (>95%) for extended periods of time.
Ying Wang, Kun Liu, De Bi, Shoubiao Zhou, Jianwen Shao   +4 more
doaj   +2 more sources

TriAnnot: a versatile and high performance pipeline for the automated annotation of plant genomes

Frontiers in Plant Science, 2012
In support of the international effort to obtain a reference sequence of the bread wheat genome and to provide plant communities dealing with large and complex genomes with a versatile, easy-to-use online automated tool for annotation, we have developed ...
Philippe eLeroy, Nicolas eGuilhot, Hiroaki eSakai, Aurélien eBernard, Frédéric eChoulet, Sébastien eTheil, Sébastien eReboux, Naoki eAmano, Timothée eFlutre, Céline ePelegrin, Hajime eOhyanagi, Michael eSeidel, Franck eGiacomoni, Matthieu eReichstadt, Michael eAlaux, Emmanuelle eGicquello, Fabrice eLegeai, Lorenzo eCerutti, Hisataka eNuma, Tsuyoshi eTanaka, Klaus eMayer, Takeshi eItoh, Hadi eQuesneville, Catherine eFeuillet   +23 more
doaj   +1 more source

Cross-phyla protein annotation by structural prediction and alignment

Genome Biology, 2023
Background Protein annotation is a major goal in molecular biology, yet experimentally determined knowledge is typically limited to a few model organisms.
Fabian Ruperti, Nikolaos Papadopoulos, Jacob M. Musser, Milot Mirdita, Martin Steinegger, Detlev Arendt   +5 more
doaj   +1 more source

BioPhysConnectoR: Connecting Sequence Information and Biophysical Models

BMC Bioinformatics, 2010
Background One of the most challenging aspects of biomolecular systems is the understanding of the coevolution in and among the molecule(s). A complete, theoretical picture of the selective advantage, and thus a functional annotation, of (co-)mutations ...
Hamacher Kay, Weil Philipp, Hoffgaard Franziska   +2 more
doaj   +1 more source

Biological process annotation of proteins across the plant kingdom

Current Plant Biology, 2014
Accurate annotation of protein function is key to understanding life at the molecular level, but automated annotation of functions is challenging.
Joachim W. Bargsten, Edouard I. Severing, Jan-Peter Nap, Gabino F. Sanchez-Perez, Aalt D.J. van Dijk   +4 more
doaj   +1 more source

Molecular BioComputing Suite: A Word Processor Add-In for the Analysis and Manipulation of Nucleic Acid and Protein Sequence Data

BioTechniques, 2001
In all fields of molecular biology, researchers are increasingly challenged by experiments planned and evaluated on the basis of nucleic acid and protein sequence data generally retrieved from public databases.
Patrick Y. Muller, Etienne Studer, André R. Miserez   +2 more
doaj   +1 more source