Results 21 to 30 of about 5,099,016 (263)

Draft genome sequence of Colletotrichum acutatum sensu lato (Colletotrichum fioriniae) [PDF]

open access: yes, 2014
In addition to its economic impact, Colletotrichum acutatum sensu lato is an interesting model for molecular investigations due to the diversity of host-determined specialization and reproductive lifestyles within the species complex.
Holub, Eric   +8 more
core   +1 more source

Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger [PDF]

open access: yes, 2009
Background Proteomic data is a potentially rich, but arguably unexploited, data source for genome annotation. Peptide identifications from tandem mass spectrometry provide prima facie evidence for gene predictions and can discriminate over a set of ...
Simon J Gaskell   +35 more
core   +1 more source

TriAnnot: a versatile and high performance pipeline for the automated annotation of plant genomes

open access: yesFrontiers in Plant Science, 2012
In support of the international effort to obtain a reference sequence of the bread wheat genome and to provide plant communities dealing with large and complex genomes with a versatile, easy-to-use online automated tool for annotation, we have developed ...
Philippe eLeroy   +23 more
doaj   +1 more source

AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system [PDF]

open access: yes, 2006
We have implemented a genome annotation system for prokaryotes called AGMIAL. Our approach embodies a number of key principles. First, expert manual annotators are seen as a critical component of the overall system; user interfaces were cyclically ...
Loux, Valentin   +33 more
core   +1 more source

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana [PDF]

open access: yes, 2007
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates were manually curated.
Hosokawa, S.   +189 more
core   +1 more source

Integrative annotation of 21,037 human genes validated by full-length cDNA clones [PDF]

open access: yes, 2004
The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein requires knowledge of the function of each gene. Currently, our knowledge in this area is still limited.
Terwilliger Joseph D   +688 more
core   +1 more source

Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans [PDF]

open access: yes, 2011
The genomes of numerous parasitic nematodes are currently being sequenced, but their complexity and size, together with high levels of intra-specific sequence variation and a lack of reference genomes, makes their assembly and annotation a challenging ...
Gilleard John S.   +34 more
core   +1 more source

BioPhysConnectoR: Connecting Sequence Information and Biophysical Models

open access: yesBMC Bioinformatics, 2010
Background One of the most challenging aspects of biomolecular systems is the understanding of the coevolution in and among the molecule(s). A complete, theoretical picture of the selective advantage, and thus a functional annotation, of (co-)mutations ...
Hamacher Kay   +2 more
doaj   +1 more source

Cross-phyla protein annotation by structural prediction and alignment

open access: yesGenome Biology, 2023
Background Protein annotation is a major goal in molecular biology, yet experimentally determined knowledge is typically limited to a few model organisms.
Fabian Ruperti   +5 more
doaj   +1 more source

Biological process annotation of proteins across the plant kingdom

open access: yesCurrent Plant Biology, 2014
Accurate annotation of protein function is key to understanding life at the molecular level, but automated annotation of functions is challenging.
Joachim W. Bargsten   +4 more
doaj   +1 more source

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