Results 31 to 40 of about 484,203 (191)

Complete genome sequence of Spirosoma linguale type strain (1). [PDF]

, 2010
Spirosoma linguale Migula 1894 is the type species of the genus. S. linguale is a free-living and non-pathogenic organism, known for its peculiar ringlike and horseshoe-shaped cell morphology. Here we describe the features of this organism, together with
Brettin, Thomas, Bristow, Jim, Bruce, David, Chain, Patrick, Chang, Yun-Juan, Chen, Amy, Chen, Feng, Cheng, Jan-Fang, Copeland, Alex, Detter, John C, Eisen, Jonathan A, Glavina Del Rio, Tijana, Goodwin, Lynne, Göker, Markus, Hauser, Loren, Hugenholtz, Philip, Ivanova, Natalia, Jeffries, Cynthia D, Klenk, Hans-Peter, Kyrpides, Nikos C, Lail, Kathleen, Land, Miriam, Lapidus, Alla, Lucas, Susan, Markowitz, Victor, Mavromatis, Konstantinos, Nolan, Matt, Ovchinnikova, Galina, Palaniappan, Krishna, Pati, Amrita, Pitluck, Sam, Rohde, Manfred, Saunders, Elizabeth, Schütze, Andrea, Sikorski, Johannes, Tice, Hope, Tindall, Brian J   +36 more
core   +1 more source

Improvements to the Gulf pipefish Syngnathus scovelli genome

GigaByte, 2023
The Gulf pipefish Syngnathus scovelli has emerged as an important species for studying sexual selection, development, and physiology. Comparative evolutionary genomics research involving fishes from Syngnathidae depends on having a high ...
Balan Ramesh , Clay M. Small , Hope Healey , Bernadette Johnson , Elyse Barker , Mark Currey , Susan Bassham , Megean Myers , William A. Cresko , Adam Gregory Jones   +9 more
doaj   +1 more source

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

Viruses, 2010
Improvements in DNA sequencing technologies portend a new era in virology and could possibly lead to a giant leap in our understanding of viral evolution and ecology.
Qiandong Zeng, William Klimke, Peter Sterk, Susmita Shrivastava, Ramana Madupu, Richard H. Scheuermann, Seth Schobel, Donald Seto, Yiming Bao, Carla Kuiken, Elliot J. Lefkowitz, Philippe Le Mercier, Raphael Leplae, Tatiana Tatusova, James Rodney Brister   +14 more
doaj   +1 more source

GIVE: portable genome browsers for personal websites. [PDF]

, 2018
Growing popularity and diversity of genomic data demand portable and versatile genome browsers. Here, we present an open source programming library called GIVE that facilitates the creation of personalized genome browsers without requiring a system ...
Alvin Zheng, B Sridhar, B Sridhar, C Tyner, D Barrios, D Comer, E Lieberman-Aiden, E Sharma, F Ozsolak, F Yue, FH Biase, JD Buenrostro, JG Aw, JT Robinson, LD Stein, ME Skinner, MJ Fullwood, Qiuyang Wu, R Bayer, R Li, R Mourad, S Carrere, Sheng Zhong, TC Nguyen, The ENCODE Project Consortium, VW Zhou, WJ Kent, X Li, X Zhou, Xiaoyi Cao, Z Lu, Zhangming Yan   +31 more
core   +2 more sources

Improving pan-genome annotation using whole genome multiple alignment

BMC Bioinformatics, 2011
Background Rapid annotation and comparisons of genomes from multiple isolates (pan-genomes) is becoming commonplace due to advances in sequencing technology.
Salzberg Steven L, Dunning Hotopp Julie C, Angiuoli Samuel V, Tettelin Hervé   +3 more
doaj   +1 more source

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

BMC Genomics, 2010
Background A goal of the Bovine Genome Database (BGD; http://BovineGenome.org) has been to support the Bovine Genome Sequencing and Analysis Consortium (BGSAC) in the annotation and analysis of the bovine genome.
Childs Kevin L, Dickens C Michael, Sundaram Jaideep P, Childers Christopher P, Reese Justin T, Vile Donald C, Elsik Christine G   +6 more
doaj   +1 more source

Complete genome sequence of Kribbella flavida type strain (IFO 14399). [PDF]

, 2010
The genus Kribbella consists of 15 species, with Kribbella flavida (Park et al. 1999) as the type species. The name Kribbella was formed from the acronym of the Korea Research Institute of Bioscience and Biotechnology, KRIBB.
Brettin, Thomas, Bristow, Jim, Bruce, David, Chain, Patrick, Chang, Yun-Juan, Chen, Amy, Chen, Feng, Cheng, Jan-Fang, Copeland, Alex, Eisen, Jonathan A, Glavina Del Rio, Tijana, Goodwin, Lynne, Göker, Markus, Hauser, Loren, Hugenholtz, Philip, Ivanova, Natalia, Jeffries, Cynthia D, Klenk, Hans-Peter, Kyrpides, Nikos C, Labutti, Kurt, Land, Miriam, Lapidus, Alla, Lucas, Susan, Markowitz, Victor, Mavromatis, Konstantinos, Mikhailova, Natalia, Nolan, Matt, Palaniappan, Krishna, Pati, Amrita, Pitluck, Sam, Pukall, Rüdiger, Rohde, Manfred, Tice, Hope   +32 more
core   +1 more source

Improving the Caenorhabditis elegans Genome Annotation Using Machine Learning [PDF]

, 2007
For modern biology, precise genome annotations are of prime importance, as they allow the accurate definition of genic regions. We employ state-of-the-art machine learning methods to assay and improve the accuracy of the genome annotation of the nematode
Bernhard Schölkopf, Gunnar Rätsch, Hanh Witte, Jagan Srinivasan, Klaus-R Müller, Ralf-J Sommer, Sören Sonnenburg, The Caenorhabditis elegans sequencing consortium, Uwe Ohler   +8 more
core   +6 more sources

Mouse genomic and cellular annotations [PDF]

Mammalian Genome, 2022
AbstractMice have emerged as one of the most popular and valuable model organisms in the research of human biology. This is due to their genetic and physiological similarity to humans, short generation times, availability of genetically homologous inbred strains, and relatively easy laboratory maintenance.
Long, Helen, Reeves, Richard, Simon, Michelle M.   +2 more
openaire   +2 more sources

Annotating the Insect Regulatory Genome [PDF]

Insects, 2021
An ever-growing number of insect genomes is being sequenced across the evolutionary spectrum. Comprehensive annotation of not only genes but also regulatory regions is critical for reaping the full benefits of this sequencing. Driven by developments in sequencing technologies and in both empirical and computational discovery strategies, the past few ...
Hasiba Asma, Marc S. Halfon
openaire   +3 more sources