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Gene Expression Commons: an open platform for absolute gene expression profiling. [PDF]
, 2012 Gene expression profiling using microarrays has been limited to comparisons of gene expression between small numbers of samples within individual experiments.
Bhattacharya, Deepta +9 more
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Spatial reconstruction of single-cell gene expression
Nature Biotechnology, 2015 Spatial localization is a key determinant of cellular fate and behavior, but methods for spatially resolved, transcriptome-wide gene expression profiling across complex tissues are lacking.
R. Satija +4 more
semanticscholar +1 more source
Gene expression tomography [PDF]
Physiological Genomics, 2002 Gene expression tomography, or GET, is a new method to increase the speed of three-dimensional (3-D) gene expression analysis in the brain. The name is evocative of the method’s dual foundations in high-throughput gene expression analysis and computerized tomographic image reconstruction, familiar from techniques such as positron emission tomography ...
BROWN, VANESSA M +6 more
openaire +4 more sources
Generalized gene co-expression analysis via subspace clustering using low-rank representation [PDF]
, 2019 BACKGROUND: Gene Co-expression Network Analysis (GCNA) helps identify gene modules with potential biological functions and has become a popular method in bioinformatics and biomedical research.
Huang, Kun, Wang, Tongxin, Zhang, Jie
core +1 more source
Progress in Gene Expression, 2020 RT-PCR is a technique to quantify gene expression in samples.
Gene .deleidi +3 more
semanticscholar +1 more source
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Bioinform., 2009 Summary: It is expected that emerging digital gene expression (DGE) technologies will overtake microarray technologies in the near future for many functional genomics applications.
M. Robinson, Davis J. McCarthy, G. Smyth
semanticscholar +1 more source
GC content of vertebrate exome landscapes reveal areas of accelerated protein evolution
BMC Evolutionary Biology, 2019 Background Rapid accumulation of vertebrate genome sequences render comparative genomics a powerful approach to study macro-evolutionary events. The assessment of phylogenic relationships between species routinely depends on the analysis of sequence ...
R. Huttener +6 more
doaj +1 more source
Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function
Nature Communications, 2020 ATRX is an RNA binding protein that mediates targeting of polycomb repressive complex 2 (PRC2) to genomic sites. Here the authors identify the RNA binding region and show that the RNA binding is required for ATRX localization and for its recruitment of ...
Wenqing Ren +11 more
doaj +1 more source
Nature, 2019 This version of the article has been accepted for publication, after peer review (when applicable) and is subject to Springer Nature's AM terms of use, but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections.
Nikos Karaiskos +5 more
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Comparative Enumeration Gene Expression [PDF]
, 2008 This paper is about differential gene expression measured by transcript counting methods such as SAGE or MPSS. It introduces two significance tests for detection of differential expressed tags: frequentist and Bayesian. Under the frequentist view, it is
Carlos A. D. E. B. Pereira +1 more
core +2 more sources