Results 11 to 20 of about 169 (169)
The Gene Ontology knowledgebase in 2023
GENETICS, 2023 Abstract The Gene Ontology (GO) knowledgebase (http://geneontology.org) is a comprehensive resource concerning the functions of genes and gene products (proteins and noncoding RNAs). GO annotations cover genes from organisms across the tree of life as well as viruses, though most gene function knowledge currently derives from experiments Suzi A Aleksander, James Balhoff, Seth Carbon, J Michael Cherry, Harold J Drabkin, Dustin Ebert, Marc Feuermann, Pascale Gaudet, Nomi L Harris, David P Hill, Raymond Lee, Huaiyu Mi, Sierra Moxon, Christopher J Mungall, Anushya Muruganugan, Tremayne Mushayahama, Paul W Sternberg, Paul D Thomas, Kimberly Van Auken, Jolene Ramsey, Deborah A Siegele, Rex L Chisholm, Petra Fey, Maria Cristina Aspromonte, Maria Victoria Nugnes, Federica Quaglia, Silvio Tosatto, Michelle Giglio, Suvarna Nadendla, Giulia Antonazzo, Helen Attrill, Gil dos Santos, Steven Marygold, Victor Strelets, Christopher J Tabone, Jim Thurmond, Pinglei Zhou, Saadullah H Ahmed, Praoparn Asanitthong, Diana Luna Buitrago, Meltem N Erdol, Matthew C Gage, Mohamed Ali Kadhum, Kan Yan Chloe Li, Miao Long, Aleksandra Michalak, Angeline Pesala, Armalya Pritazahra, Shirin C C Saverimuttu, Renzhi Su, Kate E Thurlow, Ruth C Lovering, Colin Logie, Snezhana Oliferenko, Judith Blake, Karen Christie, Lori Corbani, Mary E Dolan, Harold J Drabkin, David P Hill, Li Ni, Dmitry Sitnikov, Cynthia Smith, Alayne Cuzick, James Seager, Laurel Cooper, Justin Elser, Pankaj Jaiswal, Parul Gupta, Pankaj Jaiswal, Sushma Naithani, Manuel Lera-Ramirez, Kim Rutherford, Valerie Wood, Jeffrey L De Pons, Melinda R Dwinell, G Thomas Hayman, Mary L Kaldunski, Anne E Kwitek, Stanley J F Laulederkind, Marek A Tutaj, Mahima Vedi, Shur-Jen Wang, Peter D’Eustachio, Lucila Aimo, Kristian Axelsen, Alan Bridge, Nevila Hyka-Nouspikel, Anne Morgat, Suzi A Aleksander, J Michael Cherry, Stacia R Engel, Kalpana Karra, Stuart R Miyasato, Robert S Nash, Marek S Skrzypek, Shuai Weng, Edith D Wong, Erika Bakker, Tanya Z Berardini, Leonore Reiser, Andrea Auchincloss, Kristian Axelsen, Ghislaine Argoud-Puy, Marie-Claude Blatter, Emmanuel Boutet, Lionel Breuza, Alan Bridge, Cristina Casals-Casas, Elisabeth Coudert, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Arnaud Gos, Nadine Gruaz-Gumowski, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Philippe Le Mercier, Damien Lieberherr, Patrick Masson, Anne Morgat, Ivo Pedruzzi, Lucille Pourcel, Sylvain Poux, Catherine Rivoire, Shyamala Sundaram, Alex Bateman, Emily Bowler-Barnett, Hema Bye-A-Jee, Paul Denny, Alexandr Ignatchenko, Rizwan Ishtiaq, Antonia Lock, Yvonne Lussi, Michele Magrane, Maria J Martin, Sandra Orchard, Pedro Raposo, Elena Speretta, Nidhi Tyagi, Kate Warner, Rossana Zaru, Alexander D Diehl, Raymond Lee, Juancarlos Chan, Stavros Diamantakis, Daniela Raciti, Magdalena Zarowiecki, Malcolm Fisher, Christina James-Zorn, Virgilio Ponferrada, Aaron Zorn, Sridhar Ramachandran, Leyla Ruzicka, Monte Westerfield, Suzi A Aleksander, James Balhoff, Seth Carbon, J Michael Cherry, Harold J Drabkin, Dustin Ebert, Marc Feuermann, Pascale Gaudet, Nomi L Harris, David P Hill, Raymond Lee, Huaiyu Mi, Sierra Moxon, Christopher J Mungall, Anushya Muruganugan, Tremayne Mushayahama, Paul W Sternberg, Paul D Thomas, Kimberly Van Auken, Jolene Ramsey, Deborah A Siegele, Rex L Chisholm, Petra Fey, Maria Cristina Aspromonte, Maria Victoria Nugnes, Federica Quaglia, Silvio Tosatto, Michelle Giglio, Suvarna Nadendla, Giulia Antonazzo, Helen Attrill, Gil dos Santos, Steven Marygold, Victor Strelets, Christopher J Tabone, Jim Thurmond, Pinglei Zhou, Saadullah H Ahmed, Praoparn Asanitthong, Diana Luna Buitrago, Meltem N Erdol, Matthew C Gage, Mohamed Ali Kadhum, Kan Yan Chloe Li +199 moreopenaire +8 more sourcesBringing ontology to the Gene Ontology [PDF]
Comparative and Functional Genomics, 2003 AbstractWe present an analysis of some considerations involved in expressing the Gene Ontology (GO) as a machine‐processible ontology, reflecting principles of formal ontology. GO is a controlled vocabulary that is intended to facilitate communication between biologists by standardizing usage of terms in database annotations.Jennifer Williams, William Andersenopenaire +3 more sourcesThe Gene Ontology Categorizer [PDF]
Bioinformatics, 2004 Abstract Summary: The Gene Ontology Categorizer, developed jointly by the Los Alamos National Laboratory and Procter & Gamble Corp., provides a capability for the categorization task in the Gene Ontology (GO): given a list of genes of interest, what are the best nodes of the GO to summarize or categorize that list?Andy Fulmer, Susan M. Mniszewski, Cliff Joslyn, Gary Gordon Heaton +3 moreopenaire +3 more sourcesThe Gene Ontology project in 2008 [PDF]
Nucleic Acids Research, 2007 The Gene Ontology (GO) project (http://www.geneontology.org/) provides a set of structured, controlled vocabularies for community use in annotating genes, gene products and sequences (also see http://www.sequenceontology.org/). The ontologies have been extended and refined for several biological areas, and improvements to the structure of the ...Harris, Midori A, Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Ashburner, Michael, Tweedie, Susan, Carbon, Seth, Lewis, Suzanna, Mungall, Chris, Day Richter, John, Eilbeck, Karen, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Dong, Qing, Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Zhu, Kathy K., Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Berardini, Tanya, Li, Donghui, Rhee, Seung Y., Apweiler, Rolf, Barrell, Daniel, Camon, Evelyn, Dimmer, Emily, Huntley, Rachael, Mulder, Nicola, Khodiyar, Varsha K., Lovering, Ruth C., Povey, Sue, Chisholm, Rex, Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Kishore, Ranjana, Schwarz, Erich M., Sternberg, Paul, Van Auken, Kimberly, Giglio, Michelle Gwinn, Hannick, Linda, Wortman, Jennifer, Aslett, Martin, Berriman, Matthew, Wood, Valerie, Jacob, Howard, Laulederkind, Stan, Petri, Victoria, Shimoyama, Mary, Smith, Jennifer, Twigger, Simon, Jaiswal, Pankaj, Seigfried, Trent, Howe, Doug, Westerfield, Monte, Collmer, Candace, Torto Alalibo, Trudy, FELTRIN, ERIKA, VALLE, GIORGIO, Bromberg, Susan, Burgess, Shane, Mccarthy, Fiona +85 moreopenaire +5 more sourcesGene Ontology Annotations and Resources [PDF]
Nucleic Acids Research, 2012 The Gene Ontology (GO) Consortium (GOC, http://www.geneontology.org) is a community-based bioinformatics resource that classifies gene product function through the use of structured, controlled vocabularies. Over the past year, the GOC has implemented several processes to increase the quantity, quality and specificity of GO annotations.Gene Ontology Consortium, Blake, JA, Dolan, M, Drabkin, H, Hill, DP, Li, Ni, Sitnikov, D, Bridges, S, Burgess, S, Buza, T, McCarthy, F, Peddinti, D, Pillai, L, Carbon, S, Dietze, H, Ireland, A, Lewis, SE, Mungall, CJ, Gaudet, P, Chrisholm, RL, Fey, P, Kibbe, WA, Basu, S, Siegele, DA, McIntosh, BK, Renfro, DP, Zweifel, AE, Hu, JC, Brown, NH, Tweedie, S, Alam-Faruque, Y, Apweiler, R, Auchinchloss, A, Axelsen, K, Bely, B, Blatter, M-C, Bonilla, C, Bouguerleret, L, Boutet, E, Breuza, L, Bridge, A, Chan, WM, Chavali, G, Coudert, E, Dimmer, E, Estreicher, A, Famiglietti, L, Feuermann, M, Gos, A, Gruaz-Gumowski, N, Hieta, R, Hinz, C, Hulo, C, Huntley, R, James, J, Jungo, F, Keller, G, Laiho, K, Legge, D, Lemercier, P, Lieberherr, D, Magrane, M, Martin, MJ, Masson, P, Mutowo-Muellenet, P, O'Donovan, C, Pedruzzi, I, Pichler, K, Poggioli, D, Porras Millán, P, Poux, S, Rivoire, C, Roechert, B, Sawford, T, Schneider, M, Stutz, A, Sundaram, S, Tognolli, M, Xenarios, I, Foulgar, R, Lomax, J, Roncaglia, P, Khodiyar, VK, Lovering, RC, Talmud, PJ, Chibucos, M, Giglio, M Gwinn, Chang, H-Y, Hunter, S, McAnulla, C, Mitchell, A, Sangrador, A, Stephan, R, Harris, MA, Oliver, SG, Rutherford, K, Wood, V, Bahler, J, Lock, A, Kersey, PJ, McDowall, DM, Staines, DM, Dwinell, M, Shimoyama, M, Laulederkind, S, Hayman, T, Wang, S-J, Petri, V, Lowry, T, D'Eustachio, P, Matthews, L, Balakrishnan, R, Binkley, G, Cherry, JM, Costanzo, MC, Dwight, SS, Engel, SR, Fisk, DG, Hitz, BC, Hong, EL, Karra, K, Miyasato, SR, Nash, RS, Park, J, Skrzypek, MS, Weng, S, Wong, ED, Berardini, TZ, Huala, E, Mi, H, Thomas, PD, Chan, J, Kishore, R, Sternberg, P, Van Auken, K, Howe, D, Westerfield, M +136 moreopenaire +6 more sourcesHow the gene ontology evolves [PDF]
BMC Bioinformatics, 2011 BACKGROUND: Maintaining a bio-ontology in the long term requires improving and updating its contents so that it adequately captures what is known about biological phenomena. This paper illustrates how these processes are carried out, by studying the ways in which curators at the Gene Ontology have hitherto incorporated new knowledge into their resource.Leonelli, Sabina, Diehl, Alexander D., Christie, Karen R., Harris, Midori A., Lomax, Jane +4 moreopenaire +5 more sourcesThe Gene Ontology: enhancements for 2011 [PDF]
Nucleic Acids Research, 2011 The Gene Ontology (GO) (http://www.geneontology.org) is a community bioinformatics resource that represents gene product function through the use of structured, controlled vocabularies. The number of GO annotations of gene products has increased due to curation efforts among GO Consortium (GOC) groups, including focused literature-based annotation and ...Shyamala Sundaram, Stan Laulederkind, Stuart R. Miyasato, Shur-Jen Wang, Ruth Y. Eberhardt, Heather C. Wick, Dianna G. Fisk, Varsha K. Khodiyar, S. Jimenez, Jane Lomax, Evelyn Camon, Shane C. Burgess, Michael S. Livstone, Chantal Hulo, Rex L. Chisholm, Klemens Pichler, Jodi E. Hirschman, Lisa Matthews, Maria Jesus Martin, Elisabeth Coudert, K. Van Auken, L. Ni, Cynthia J. Krieger, Fiona M. McCarthy, Seth Carbon, Rolf Apweiler, Dong Li, Alan Bridge, Warren A. Kibbe, Mary E. Dolan, David P. Hill, Catherine Rivoire, Timothy F. Lowry, Lydie Bougueleret, Suzanna E. Lewis, H. Sehra, Kara Dolinski, Marek S. Skrzypek, Antonia Lock, Shuai Weng, Lionel Breuza, P. Duek-Roggli, P. Porras Millán, Ralf Stephan, Monte Westerfield, Malcolm J. Gardner, Valerie Wood, Susan Tweedie, Eurie L. Hong, Paola Roncaglia, Duncan Legge, Kim Rutherford, Rachael P. Huntley, Guillaume Keller, B. K. McIntosh, Michele Magrane, P Lemercier, M. Gwinn Giglio, Paul Browne, Adrienne E. Zweifel, James C. Hu, H. Drabkin, Michael Tognolli, Lakshmi Pillai, Kati Laiho, Maria C. Costanzo, Ghislaine Argoud-Puy, Yasmin Alam-Faruque, Philippa J. Talmud, Daniel M. Staines, L Famiglietti, Maria Victoria Schneider, Benjamin C. Hitz, Teresia Buza, E. Dimmer, D. Sitnikov, Robert S. Nash, C. D. Amundsen, Ursula Hinz, M. Moinat, Ivo Pedruzzi, Florence Jungo, Damien Lieberherr, Edith D. Wong, Nicholas H. Brown, Paul W. Sternberg, Julie Park, Hui Wang, Isabelle Cusin, Paul J. Kersey, Karen R. Christie, Petra Fey, S. Branconi-Quintaje, P D'Eustachio, Gail Binkley, Stephen G. Oliver, Andre Stutz, Douglas G. Howe, J. M. Cherry, Kristian B. Axelsen, Nadine Gruaz-Gumowski, Emmanuel Boutet, S. Ferro-Rojas, Tanya Z. Berardini, Ranjana Kishore, Deborah A. Siegele, Daniel P. Renfro, Arnaud Gos, Eleanor J Stanley, Mark D. McDowall, Rama Balakrishnan, Eva Huala, Patrick Masson, Midori A. Harris, Cathy R. Gresham, S. Basu, Diego Poggioli, Stacia R. Engel, M Feuermann, Tom Hayman, Claire O'Donovan, Sylvain Poux, Donna K. Slonim, Mary Shimoyama, Ruth C. Lovering, Juancarlos Chan, Benoit Bely, Rebecca E. Foulger, Marcus C. Chibucos, Kalpana Karra, Paul Thomas, P Gaudet, Melinda R. Dwinell, Selina S. Dwight, Anne Estreicher, Bernd Roechert, Judith A. Blake, A. Auchinchloss, Ioannis Xenarios, M. C. Blatter, W. M. Chan, J. James, Victoria Petri, Tony Sawford, Jürg Bähler, Sven Heinicke, Christopher J. Mungall +146 moreopenaire +6 more sourcesExploring autophagy with Gene Ontology [PDF]
Autophagy, 2018 Autophagy is a fundamental cellular process that is well conserved among eukaryotes. It is one of the strategies that cells use to catabolize substances in a controlled way. Autophagy is used for recycling cellular components, responding to cellular stresses and ridding cells of foreign material.Paul Denny, Marc Feuermann, David P. Hill, Ruth C. Lovering, Helene Plun-Favreau, Paola Roncaglia +5 moreopenaire +5 more sources
