Results 31 to 40 of about 347,215 (296)

From Plant Ontology to Gene Ontology and back

Current Plant Biology, 2018
Our recent goal for the Plant Ontology (PO) is to have it integrated with the Gene Ontology (GO). The simplest aspect of this is to link morphological and anatomical images of structures for PO terms with genes involved in the development of those ...
Dennis Stevenson, Cecilia Zumajo-Cardona
doaj   +1 more source

Cross-Ontology multi-level association rule mining in the Gene Ontology. [PDF]

PLoS ONE, 2012
The Gene Ontology (GO) has become the internationally accepted standard for representing function, process, and location aspects of gene products. The wealth of GO annotation data provides a valuable source of implicit knowledge of relationships among ...
Prashanti Manda, Seval Ozkan, Hui Wang, Fiona McCarthy, Susan M Bridges   +4 more
doaj   +1 more source

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool

BMC Bioinformatics, 2006
Background The Gene Ontology has become an extremely useful tool for the analysis of genomic data and structuring of biological knowledge. Several excellent software tools for navigating the gene ontology have been developed.
Huttenhower Curtis, Hibbs Matthew A, Sealfon Rachel SG, Myers Chad L, Troyanskaya Olga G   +4 more
doaj   +1 more source

Mining the Gene Wiki for functional genomic knowledge

BMC Genomics, 2011
Background Ontology-based gene annotations are important tools for organizing and analyzing genome-scale biological data. Collecting these annotations is a valuable but costly endeavor.
Good Benjamin M, Howe Douglas G, Lin Simon M, Kibbe Warren A, Su Andrew I   +4 more
doaj   +1 more source

The Gene Ontology resource: enriching a GOld mine.

, 2021
The Gene Ontology Consortium (GOC) provides the most comprehensive resource currently available for computable knowledge regarding the functions of genes and gene products. Here, we report the advances of the consortium over the past two years.
Gene Ontology Consortium (10154432)
core   +2 more sources

The Gene Ontology (GO) project in 2006 [PDF]

, 2006
The Gene Ontology (GO) project (http://www.geneontology.org) develops and uses a set of structured, controlled vocabularies for community use in annotating genes, gene products and sequences (also see http://song.sourceforge.net/).
Gene, Ontology Consortium
core   +1 more source

Gene Ontology Consortium: going forward

, 2015
The Gene Ontology (GO; http://www.geneontology.org) is a community-based bioinformatics resource that supplies information about gene product function using ontologies to represent biological knowledge.
The gene ontology consortium, Gaudet, Pascale   +1 more
core   +2 more sources

A hierarchical classification ant colony algorithm for predicting gene ontology terms [PDF]

, 2009
This paper proposes a novel Ant Colony Optimisation algorithm for the hierarchical problem of predicting protein functions using the Gene Ontology (GO).
Otero, Fernando E.B., Colin G. Johnson, Johnson, Colin G., Alex A. Freitas, Freitas, Alex A., Fernando E. B. Otero   +5 more
core   +1 more source

Classifying genes to the correct Gene Ontology Slim term in Saccharomyces cerevisiae using neighbouring genes with classification learning

BMC Genomics, 2010
Background There is increasing evidence that gene location and surrounding genes influence the functionality of genes in the eukaryotic genome. Knowing the Gene Ontology Slim terms associated with a gene gives us insight into a gene's functionality by ...
Tsatsoulis Costas, Amthauer Heather A
doaj   +1 more source

InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk

BMC Genomics, 2018
Background Since the establishment of the first biomedical ontology Gene Ontology (GO), the number of biomedical ontology has increased dramatically. Nowadays over 300 ontologies have been built including extensively used Disease Ontology (DO) and Human ...
Liang Cheng, Yue Jiang, Hong Ju, Jie Sun, Jiajie Peng, Meng Zhou, Yang Hu   +6 more
doaj   +1 more source