Results 51 to 60 of about 7,457,987 (378)
GoFigure: Automated Gene Ontology™ annotation [PDF]
Bioinformatics, 2003 Abstract Summary: We have developed a web tool to predict Gene Ontology (GO) terms. The tool accepts an input DNA or protein sequence, and uses BLAST to identify homologous sequences in GO annotated databases. A graph is returned to the user via email. Availability: The tool is freely available at: http://udgenome.ags.udel.
Salim, Khan +3 more
openaire +2 more sources
Construction of ontology augmented networks for protein complex prediction.
PLoS ONE, 2013 Protein complexes are of great importance in understanding the principles of cellular organization and function. The increase in available protein-protein interaction data, gene ontology and other resources make it possible to develop computational ...
Yijia Zhang +3 more
doaj +1 more source
Gene function prediction based on the Gene Ontology hierarchical structure. [PDF]
PLoS ONE, 2014 The information of the Gene Ontology annotation is helpful in the explanation of life science phenomena, and can provide great support for the research of the biomedical field.
Liangxi Cheng +4 more
doaj +1 more source
Onion Extract on Cell Gene Expression Profile: a System Biology Approach [PDF]
Research Journal of Pharmacognosy, 2023 Background and objectives: Widespread consuming of onion as a nutrient in the world implies more investigations about useful and harmful aspects of this common supplementary food.
Babak Arjmand +5 more
doaj +1 more source
Length bias correction in gene ontology enrichment analysis using logistic regression. [PDF]
PLoS ONE, 2012 When assessing differential gene expression from RNA sequencing data, commonly used statistical tests tend to have greater power to detect differential expression of genes encoding longer transcripts. This phenomenon, called "length bias", will influence
Gu Mi +4 more
doaj +1 more source
A Gene Ontology Tutorial in Python. [PDF]
, 2017 This chapter is a tutorial on using Gene Ontology resources in the Python programming language. This entails querying the Gene Ontology graph, retrieving Gene Ontology annotations, performing gene enrichment analyses, and computing basic semantic ...
Dessimoz, C., Vesztrocy, A.W.
core +2 more sources
GOATOOLS: A Python library for Gene Ontology analyses
Scientific Reports, 2018 The biological interpretation of gene lists with interesting shared properties, such as up- or down-regulation in a particular experiment, is typically accomplished using gene ontology enrichment analysis tools. Given a list of genes, a gene ontology (GO)
D. Klopfenstein +13 more
semanticscholar +1 more source
Exploring autophagy with Gene Ontology [PDF]
Autophagy, 2018 Autophagy is a fundamental cellular process that is well conserved among eukaryotes. It is one of the strategies that cells use to catabolize substances in a controlled way. Autophagy is used for recycling cellular components, responding to cellular stresses and ridding cells of foreign material.
Paul Denny +5 more
openaire +4 more sources
Extending gene ontology with gene association networks [PDF]
Bioinformatics, 2015 Abstract Motivation: Gene ontology (GO) is a widely used resource to describe the attributes for gene products. However, automatic GO maintenance remains to be difficult because of the complex logical reasoning and the need of biological knowledge that are not explicitly represented in the GO.
Jiajie, Peng +4 more
openaire +2 more sources
Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 2021 Gene regulation computational research requires handling and integrating large amounts of heterogeneous data. The Gene Ontology has demonstrated that ontologies play a fundamental role in biological data interoperability and integration. Ontologies help to express data and knowledge in a machine processable way, which enables complex querying and ...
Cortés, BJ +9 more
openaire +7 more sources