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Gene Regulatory Networks

2007
Two gene regulatory networks inferred from different types of data are considered in this chapter. Gene expression networks are networks inferred from microarray time series data and transcription factor networks are networks obtained from a new genome-wide technique that allows an identification of all of the DNA binding sites for each transcription ...
T. Gregory Dewey, David J. Galas
openaire   +1 more source

The gene regulatory network

Proceedings of the 10th annual conference on Genetic and evolutionary computation, 2008
This paper proposes a new approach for biologically inspired computing on the basis of Gene Regulatory Networks. These networks are models of genes and dynamic interactions that take place between them. The differential equation representations of such networks resemble neural networks as well as idiotypic networks in immune system.
Sanjoy Das   +4 more
openaire   +1 more source

Learning Structure of a Gene Regulatory Network

6th IEEE/ACIS International Conference on Computer and Information Science (ICIS 2007), 2007
Application of high-throughput data from microarray experiments is a promising way of finding regulatory relationships between genes. Recently, a causal model approach was presented for learning gene regulatory networks from microarray data. The paper investigates and extends this model by identifying the way in which the causal structure can be best ...
Ramesh Ram, Madhu Chetty
openaire   +1 more source

The gene regulatory networks controlled by estrogens

Molecular and Cellular Endocrinology, 2011
Estrogen signaling occurs widely among vertebrates and in some invertebrates. Estrogen action is mediated by estrogen receptors through the regulation of target gene expression. Estrogen mediated control of gene expression is a complex process including ligand-receptor interactions, receptor-DNA interactions and receptor-cofactor interactions.
Hui, Gao, Karin, Dahlman-Wright
openaire   +2 more sources

A protocol for unraveling gene regulatory networks

Nature Protocols, 2008
Regulatory genes form large networks that are fundamental to the developmental program. The protocol presented here describes a general approach to assemble maps of gene regulatory networks (GRNs). It combines high-resolution spatio-temporal profiling of regulatory genes, strategies to perturb gene expression and quantification of perturbation effects ...
Materna, Stefan C., Oliveri, Paola
openaire   +3 more sources

Gene Regulatory Networks from Gene Ontology

2013
Gene Ontology (GO) provides a controlled vocabulary and hierarchy of terms to facilitate the annotation of gene functions and molecular attributes. Given a set of genes, a Gene Ontology Network (GON) can be constructed from the corresponding GO annotations and semantic relations among GO terms.
Wenting Liu   +5 more
openaire   +1 more source

Evolving gene regulatory networks

Biosystems, 2009
Jin, Yaochu, Hallinan, Jennifer
openaire   +3 more sources

Gene Regulatory Networks

2019
Gene regulatory networks: methods and protocols , Gene regulatory networks: methods and protocols , کتابخانه‌های دانشگاه ...
openaire   +1 more source

The Ciona Notochord Gene Regulatory Network

2018
Complex gene regulatory networks are at the heart of cell fate specification and differentiation. The simple chordate Ciona has remarkable advantages for the dissection of these regulatory networks, including a stereotypically chordate but extremely small and simple embryo, a streamlined and compact genome, and highly efficient transgenesis by ...
openaire   +2 more sources

Gene regulatory network inference in single-cell biology

Current Opinion in Systems Biology, 2021
Kyle Akers, T M Murali
exaly  

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