Results 31 to 40 of about 6,728,627 (290)

Supervised inference of gene-regulatory networks

BMC Bioinformatics, 2008
Background Inference of protein interaction networks from various sources of data has become an important topic of both systems and computational biology.
Vohradsky Jiri, To Cuong C
doaj   +1 more source

tmnolan/Brassinosteroid-gene-regulatory-networks-at-cellular-resolution: Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root

, 2022
This code accompanies the manuscript "Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root"
Hsu-Che-Wei, Trevor Nolan, Laura Greenstreet   +2 more
core   +1 more source

Comprehensive information-based differential gene regulatory networks analysis (CIdrgn): Application to gastric cancer and chemotherapy-responsive gene network identification.

PLoS ONE, 2023
Biological condition-responsive gene network analysis has attracted considerable research attention because of its ability to identify pathways or gene modules involved in the underlying mechanisms of diseases.
Heewon Park, Seiya Imoto, Satoru Miyano
doaj   +2 more sources

GeRNet: a gene regulatory network tool [PDF]

Biosystems, 2017
Gene regulatory networks (GRNs) are crucial in every process of life since they govern the majority of the molecular processes. Therefore, the task of assembling these networks is highly important. In particular, the so called model-free approaches have an advantage modeling the complexities of dynamic molecular networks, since most of the gene ...
Julieta Sol Dussaut, Cristian Andrés Gallo, Fiorella Cravero, María Jimena Martínez, Jessica Andrea Carballido, Ignacio Ponzoni   +5 more
openaire   +4 more sources

Mutational robustness of gene regulatory networks.

PLoS ONE, 2012
Mutational robustness of gene regulatory networks refers to their ability to generate constant biological output upon mutations that change network structure.
Aalt D J van Dijk, Simon van Mourik, Roeland C H J van Ham   +2 more
doaj   +1 more source

Survey of Research on Non-homogeneous Gene Regulatory Network Models [PDF]

Jisuanji kexue yu tansuo, 2023
In the field of bioinformatics, the construction of gene regulatory networks is crucial. In recent years, non-homogeneous dynamic Bayesian networks have become a common modeling tool for learning gene regulatory networks from gene expression time-series ...
ZHANG Qianqian, HU Chunling, ZHANG Jiayao, LI Dawei, SHAO Mingyi
doaj   +1 more source

Dynamical methods for target control of biological networks

Royal Society Open Science, 2023
Estimating the influence that individual nodes have on one another in a Boolean network is essential to predict and control the system’s dynamical behaviour, for example, detecting key therapeutic targets to control pathways in models of biological ...
Thomas Parmer, Filippo Radicchi
doaj   +1 more source

Correlated fluctuations carry signatures of gene regulatory network dynamics [PDF]

, 2010
The dynamics of transcriptional control involve small numbers of molecules and result in significant fluctuations in protein and mRNA concentrations.
Pakka, V. H., Pakka, Vijayanarasimha H., Prugel-Bennett, Adam, Prugel-Bennett, A., Adam Prügel-Bennett, Dasmahapatra, S., Pakka, Vijayanarasimha, Dasmahapatra, Srinandan, Vijayanarasimha H. Pakka, Srinandan Dasmahapatra   +9 more
core   +1 more source

Effects of Time Point Measurement on the Reconstruction of Gene Regulatory Networks

Molecules, 2010
With the availability of high-throughput gene expression data in the post-genomic era, reconstruction of gene regulatory networks has become a hot topic.
Bairong Shen, Yuanyuan Zhang, Jiajia Chen, Yang Yang, Huangqiong Zhu, Wenying Yan   +5 more
doaj   +1 more source

Predicting gene regulatory networks from cell atlases

Life Science Alliance, 2020
Integrated single-cell gene regulatory network from three mouse cell atlases captures global and cell type–specific regulatory modules and crosstalk, important for cellular identity.
Andreas Fønss Møller, Kedar Nath Natarajan   +1 more
doaj   +1 more source