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Dumpster diving for diatom plastid 16S rRNA genes [PDF]
PeerJ, 2021 High throughput sequencing is improving the efficiency of monitoring diatoms, which inhabit and support aquatic ecosystems across the globe. In this study, we explored the potential of a standard V4 515F-806RB primer pair in recovering diatom plastid 16S
Krista L. Bonfantine +4 more
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Reconstructing 16S rRNA genes in metagenomic data [PDF]
Bioinformatics, 2015 Metagenomic data, which contains sequenced DNA reads of uncultured microbial species from environmental samples, provide a unique opportunity to thoroughly analyze microbial species that have never been identified before. Reconstructing 16S ribosomal RNA,
Cheng Yuan +3 more
semanticscholar +3 more sources
Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana
G3: Genes, Genomes, Genetics, 2017 The considerable genome size variation in Arabidopsis thaliana has been shown largely to be due to copy number variation (CNV) in 45S ribosomal RNA (rRNA) genes.
Fernando A. Rabanal +6 more
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Epigenetic silencing of nucleolar rRNA genes in Alzheimer's disease. [PDF]
PLoS ONE, 2011 Ribosomal deficits are documented in mild cognitive impairment (MCI), which often represents an early stage Alzheimer's disease (AD), as well as in advanced AD. The nucleolar rRNA genes (rDNA), transcription of which is critical for ribosomal biogenesis,
Maciej Pietrzak +4 more
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Mycoplasma gallisepticum16S rRNA genes [PDF]
FEMS Microbiology Letters, 1995 The genome of Mycoplasma gallisepticum A5969 contains a truncated pseudogene for 16S rRNA in addition to a single unsplit rRNA-operon and a second discontinuous set of rRNA genes. Other M. gallisepticum strains tested do not possess the truncated gene.
A, Skamrov +3 more
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Diversity of 23S rRNA genes within individual prokaryotic genomes. [PDF]
PLoS ONE, 2009 The concept of ribosomal constraints on rRNA genes is deduced primarily based on the comparison of consensus rRNA sequences between closely related species, but recent advances in whole-genome sequencing allow evaluation of this concept within organisms ...
Anna Pei +6 more
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Compilation of 5S rRNA and 5S rRNA gene sequences [PDF]
Nucleic Acids Research, 1997 The compilation of 5S rRNA and 5S rRNA gene nucleotide sequences as of 30 September 1996, contains a total of 1661 primary structures of 5S rRNAs or their genes, which is an increase of 928 new sequence entries over the last compilation. It covers sequences from 54 archaea, 449 eubacteria, 34 plastids, nine mitochondria and 430 eukaryotes. The databank
T, Specht +4 more
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Ribosomal DNA localization on Lathyrus species chromosomes by FISH
Journal of Genetic Engineering and Biotechnology, 2020 Background Fluorescence In Situ Hybridization (FISH) played an essential role to locate the ribosomal RNA genes on the chromosomes that offered a new tool to study the chromosome structure and evolution in plant. The 45S and 5S rRNA genes are independent
Hoda B. M. Ali, Samira A. Osman
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Chicken rRNA Gene Cluster Structure
PLOS ONE, 2016 Ribosomal RNA (rRNA) genes, whose activity results in nucleolus formation, constitute an extremely important part of genome. Despite the extensive exploration into avian genomes, no complete description of avian rRNA gene primary structure has been offered so far. We publish a complete chicken rRNA gene cluster sequence here, including 5'ETS (1836 bp),
Alexander G. Dyomin +7 more
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Functional conservation of mitochondrial RNA levels despite divergent mtDNA organization
BMC Research Notes, 2020 Objective Mitochondria-encoded ribosomal RNA (rRNA) genes in humans are expressed at a higher rate than protein coding genes of the mitochondria. The organization of the human mitochondrial genome (mtDNA) is amenable to differential expression of rRNAs ...
James P. Held, Maulik R. Patel
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