Results 21 to 30 of about 2,597,991 (390)
Nature Genetics, 2021 Rye (Secale cereale L.) is an exceptionally climate-resilient cereal crop, used extensively to produce improved wheat varieties via introgressive hybridization and possessing the entire repertoire of genes necessary to enable hybrid breeding.
M. T. Rabanus-Wallace +62 more
semanticscholar +1 more source
BMC Research Notes, 2023 Objective The tarnished plant bug (TPB), Lygus lineolaris (Palisot de Beauvois) (Hemiptera: Miridae), is a pest damaging many cultivated crops in North America.
O. P. Perera +10 more
doaj +1 more source
Are we there yet? : reliably estimating the completeness of plant genome sequences [PDF]
, 2016 Genome sequencing is becoming cheaper and faster thanks to the introduction of next-generation sequencing techniques. Dozens of new plant genome sequences have been released in recent years, ranging from small to gigantic repeat-rich or polyploid genomes.
Ruttink, Tom +2 more
core +3 more sources
Data in Brief, 2022 Trichoderma asperellum PK1J2 is a promising cellulase-producing fungus isolated from a palm empty fruit bunch in Riau, Indonesia. Presented here is the genome assembly of T. asperellum PK1J2.
Fela Laila Nur Hidayati +4 more
doaj +1 more source
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
J. Comput. Biol., 2012 The lion's share of bacteria in various environments cannot be cloned in the laboratory and thus cannot be sequenced using existing technologies. A major goal of single-cell genomics is to complement gene-centric metagenomic data with whole-genome ...
A. Bankevich +15 more
semanticscholar +1 more source
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology [PDF]
, 2016 Background The evolution of Next-Generation Sequencing (NGS) has considerably reduced the cost per sequenced-base, allowing a significant rise of sequencing projects, mainly in prokaryotes. However, the range of available NGS platforms requires different
Aguiar, Edgar L. +13 more
core +3 more sources
Whole-genome shotgun assembly and comparison of human genome assemblies [PDF]
Proceedings of the National Academy of Sciences, 2004 We report a whole-genome shotgun assembly (called WGSA) of the human genome generated at Celera in 2001. The Celera-generated shotgun data set consisted of 27 million sequencing reads organized in pairs by virtue of end-sequencing 2-kbp, 10-kbp, and 50-kbp inserts from shotgun clone libraries. The quality-trimmed reads covered the genome 5.3 times, and
Istrail, S. +35 more
openaire +3 more sources
BMC Genomics, 2019 Background Mithun (Bos frontalis), also called gayal, is an endangered bovine species, under the tribe bovini with 2n = 58 XX chromosome complements and reared under the tropical rain forests region of India, China, Myanmar, Bhutan and Bangladesh ...
Sabyasachi Mukherjee +11 more
doaj +1 more source
AFLAP: assembly-free linkage analysis pipeline using k-mers from genome sequencing data
Genome Biology, 2021 Our assembly-free linkage analysis pipeline (AFLAP) identifies segregating markers as k-mers in the raw reads without using a reference genome assembly for calling variants and provides genotype tables for the construction of unbiased, high-density ...
Kyle Fletcher +5 more
doaj +1 more source
PLoS ONE, 2014 Advances in modern sequencing technologies allow us to generate sufficient data to analyze hundreds of bacterial genomes from a single machine in a single day.
B. J. Walker +10 more
semanticscholar +1 more source