Results 31 to 40 of about 176,908 (324)

Data mining of rice genome

open access: yes浙江大学学报. 农业与生命科学版, 2005
In this review, we focus on four recent advances in rice genome analysis: an whole genome duplication which is believed to occur in rice genome; evolution of rice genome size; the indica-japonic divergence that was likely to occur later than the previous
FAN Long-jiang, GUO Xing-yi
doaj   +1 more source

Marine-Derived Streptomyces sennicomposti GMY01 with Anti-Plasmodial and Anticancer Activities: Genome Analysis, In Vitro Bioassay, Metabolite Profiling, and Molecular Docking

open access: yesMicroorganisms, 2023
To discover novel antimalarial and anticancer compounds, we carried out a genome analysis, bioassay, metabolite profiling, and molecular docking of marine sediment actinobacteria strain GMY01. The whole-genome sequence analysis revealed that Streptomyces
Jaka Widada   +5 more
doaj   +1 more source

PROPHECY—a database for high-resolution phenomics [PDF]

open access: yes, 2004
The rapid recent evolution of the field phenomics—the genome-wide study of gene dispensability by quantitative analysis of phenotypes—has resulted in an increasing demand for new data analysis and visualization tools.
Blomberg, Anders   +6 more
core   +2 more sources

Generate a bioactive natural product library by mining bacterial cytochrome P450 patterns

open access: yesSynthetic and Systems Biotechnology, 2016
The increased number of annotated bacterial genomes provides a vast resource for genome mining. Several bacterial natural products with epoxide groups have been identified as pre-mRNA spliceosome inhibitors and antitumor compounds through genome mining ...
Xiangyang Liu
doaj   +1 more source

Pseudomonassin, a New Bioactive Ribosomally Synthesised and Post-Translationally Modified Peptide from Pseudomonas sp. SST3

open access: yesMicroorganisms, 2023
Genome mining and metabolomics have become valuable tools in natural products research to evaluate and identify potential new chemistry from bacteria. In the search for new compounds from the deep-sea organism, Pseudomonas sp.
Kevin Jace Miranda   +6 more
doaj   +1 more source

Advanced Genomic Data Mining

open access: yesPLoS Computational Biology, 2008
As data banks increase their size, one of the current challenges in bioinformatics is to be able to query them in a sensible way. Information is contained in different databases, with various data representations or formats, making it very difficult to use a single query tool to search more than a single data source.
Xosé M Fernández-Suárez, Ewan Birney
openaire   +4 more sources

The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis [PDF]

open access: yes, 2013
Despite the availability of various data repositories for plant research, a wealth of information currently remains hidden within the biomolecular literature. Text mining provides the necessary means to retrieve these data through automated processing of
De Bodt, Stefanie   +4 more
core   +2 more sources

Mining Pure, Strict Epistatic Interactions from High-Dimensional Datasets: Ameliorating the Curse of Dimensionality [PDF]

open access: yes, 2012
Background: The interaction between loci to affect phenotype is called epistasis. It is strict epistasis if no proper subset of the interacting loci exhibits a marginal effect.
Richard E. Neapolitan   +2 more
core   +6 more sources

Enhanced Bacterial Foraging Optimization Based on Progressive Exploitation Toward Local Optimum and Adaptive Raid

open access: yesIEEE Access, 2019
Since the bacterial foraging optimization algorithm (BFO) was proposed, many variants about it have been designed in order to improve the performance and applied in different fields.
Dongxing Wang   +5 more
doaj   +1 more source

Computational Genomics of Specialized Metabolism: from Natural Product Discovery to Microbiome Ecology

open access: yesmSystems, 2018
Microbial and plant specialized metabolites, also known as natural products, are key mediators of microbe-microbe and host-microbe interactions and constitute a rich resource for drug development.
Marnix H. Medema
doaj   +1 more source

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