Results 11 to 20 of about 81,508 (252)
Rearrangement Events on Circular Genomes
Bulletin of Mathematical Biology, 2023 AbstractEarly literature on genome rearrangement modelling views the problem of computing evolutionary distances as an inherently combinatorial one. In particular, attention is given to estimating distances using the minimum number of events required to transform one genome into another.
Joshua Stevenson +2 more
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Finding local genome rearrangements [PDF]
Algorithms for Molecular Biology, 2018 The double cut and join (DCJ) model of genome rearrangement is well studied due to its mathematical simplicity and power to account for the many events that transform gene order. These studies have mostly been devoted to the understanding of minimum length scenarios transforming one genome into another. In this paper we search instead for rearrangement
Swenson, Krister, Simonaitis, Pijus
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Comparative genomics reveals insight into the evolutionary origin of massively scrambled genomes
eLife, 2022 Ciliates are microbial eukaryotes that undergo extensive programmed genome rearrangement, a natural genome editing process that converts long germline chromosomes into smaller gene-rich somatic chromosomes.
Yi Feng +6 more
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Rearrangement of Noisy Genomes [PDF]
, 2006 Measures of distance between genomic maps are inflated by high levels of noise due to incorrectly resolved paralogy and error at the mapping, sequencing and alignment levels. Comparison is also hampered by lack of information on gene orientation and lack gene order.
Chunfang Zheng, David Sankoff
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progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. [PDF]
PLoS ONE, 2010 Multiple genome alignment remains a challenging problem. Effects of recombination including rearrangement, segmental duplication, gain, and loss can create a mosaic pattern of homology even among closely related organisms.We describe a new method to ...
Aaron E Darling, Bob Mau, Nicole T Perna
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G3: Genes, Genomes, Genetics, 2020 The aim of this study was to analyze the genomic homology between cattle (Bos taurus) and buffaloes (Bubalus bubalis) and to propose a rearrangement of the buffalo genome through linkage disequilibrium analyses of buffalo SNP markers referenced in the ...
Daniel Jordan de Abreu Santos +9 more
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A New Algorithm for Identifying Genome Rearrangements in the Mammalian Evolution
Frontiers in Genetics, 2019 Genome rearrangements are the evolutionary events on level of genomes. It is a global view on evolution research of species to analyze the genome rearrangements.
Juan Wang +4 more
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Combinatorics of Genome Rearrangements [PDF]
, 2009 A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically oriented but offering biological explanations when required. From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar.
Fertin, Guillaume +4 more
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Genome dedoubling by DCJ and reversal
BMC Bioinformatics, 2011 Background Segmental duplications in genomes have been studied for many years. Recently, several studies have highlighted a biological phenomenon called breakpoint-duplication that apparently associates a significant proportion of segmental duplications ...
Ouangraoua Aïda +2 more
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Sorting Permutations by λ-Operations [PDF]
Journal of Universal Computer Science, 2019 For estimating the evolutionary distance between genomes of two different organisms, many sorting permutation problems have emerged. A well accepted way to do this is considering the smallest sequence of rearrangement events { mutations which affect ...
Guilherme Henrique Santos Miranda +2 more
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