Results 1 to 10 of about 333,629 (311)

Ensemble AnalySis with Interpretable Genomic Prediction (EasiGP): Computational tool for interpreting ensembles of genomic prediction models [PDF]

The Plant Genome
An ensemble of multiple genomic prediction models has grown in popularity due to consistent prediction performance improvements in crop breeding. However, technical tools that analyze the predictive behavior at the genome level are lacking.
Shunichiro Tomura, Melanie J. Wilkinson, Owen Powell, Mark Cooper   +3 more
doaj   +2 more sources

Genomic Prediction Using LD-Based Haplotypes in Combined Pig Populations

Frontiers in Genetics, 2022
The size of reference population is an important factor affecting genomic prediction. Thus, combining different populations in genomic prediction is an attractive way to improve prediction ability.
Haoqiang Ye, Zipeng Zhang, Duanyang Ren, Xiaodian Cai, Qianghui Zhu, Xiangdong Ding, Hao Zhang, Zhe Zhang, Jiaqi Li   +8 more
doaj   +3 more sources

Utilization Strategies of Two Environment Phenotypes in Genomic Prediction

Genes, 2022
Multiple environment phenotypes may be utilized to implement genomic prediction in plant breeding, while it is unclear about optimal utilization strategies according to its different availability.
Qing Lin, Jinyan Teng, Jiaqi Li
exaly   +2 more sources

Survival prediction from clinico-genomic models - a comparative study [PDF]

BMC Bioinformatics, 2009
Background Survival prediction from high-dimensional genomic data is an active field in today's medical research. Most of the proposed prediction methods make use of genomic data alone without considering established clinical covariates that often are ...
Nygård Ståle, Bøvelstad Hege M, Borgan Ørnulf   +2 more
doaj   +2 more sources

Sibling variation in polygenic traits and DNA recombination mapping with UK Biobank and IVF family data

Scientific Reports, 2023
We use UK Biobank and a unique IVF family dataset (including genotyped embryos) to investigate sibling variation in both phenotype and genotype. We compare phenotype (disease status, height, blood biomarkers) and genotype (polygenic scores, polygenic ...
Louis Lello, Maximus Hsu, Erik Widen, Timothy G. Raben   +3 more
doaj   +1 more source

Estimation of Pool Construction and Technical Error

Agriculture, 2021
Pooling animals with extreme phenotypes can improve the accuracy of genetic evaluation or provide genetic evaluation for novel traits at relatively low cost by exploiting large amounts of low-cost phenotypic data from animals in the commercial sector ...
John Keele, Tara McDaneld, Ty Lawrence, Jenny Jennings, Larry Kuehn   +4 more
doaj   +1 more source

Application of Genomic Data for Reliability Improvement of Pig Breeding Value Estimates

Animals, 2021
Replacement pigs’ genomic prediction for reproduction (total number and born alive piglets in the first parity), meat, fatness and growth traits (muscle depth, days to 100 kg and backfat thickness over 6–7 rib) was tested using single-step genomic best ...
Ekaterina Melnikova, Artem Kabanov, Sergey Nikitin, Maria Somova, Sergey Kharitonov, Petr Otradnov, Olga Kostyunina, Tatiana Karpushkina, Elena Martynova, Aleksander Sermyagin, Natalia Zinovieva   +10 more
doaj   +1 more source

Utility and First Clinical Application of Screening Embryos for Polygenic Disease Risk Reduction

Frontiers in Endocrinology, 2019
For over 2 decades preimplantation genetic testing (PGT) has been in clinical use to reduce the risk of miscarriage and genetic disease in patients with advanced maternal age and risk of transmitting disease.
Nathan R. Treff, Nathan R. Treff, Jennifer Eccles, Jennifer Eccles, Lou Lello, Lou Lello, Elan Bechor, Jeffrey Hsu, Kathryn Plunkett, Kathryn Plunkett, Raymond Zimmerman, Raymond Zimmerman, Bhavini Rana, Bhavini Rana, Artem Samoilenko, Steven Hsu, Laurent C. A. M. Tellier, Laurent C. A. M. Tellier, Laurent C. A. M. Tellier   +18 more
doaj   +1 more source

Evaluation of the efficiency of genomic versus pedigree predictions for growth and wood quality traits in Scots pine

BMC Genomics, 2020
Background Genomic selection (GS) or genomic prediction is a promising approach for tree breeding to obtain higher genetic gains by shortening time of progeny testing in breeding programs.
Ainhoa Calleja-Rodriguez, Jin Pan, Tomas Funda, Zhiqiang Chen, John Baison, Fikret Isik, Sara Abrahamsson, Harry X. Wu   +7 more
doaj   +1 more source

Best Linear Unbiased Prediction of Genomic Breeding Values Using a Trait-Specific Marker-Derived Relationship Matrix [PDF]

, 2010
Background: With the availability of high density whole-genome single nucleotide polymorphism chips, genomic selection has become a promising method to estimate genetic merit with potentially high accuracy for animal, plant and aquaculture species of ...
Bijma, Piter, Bijma Piter, Dirk-Jan de Koning, Liu, J.F., Bijma, P., de Koning Dirk-Jan, Zhang, Zhe, Ding, Xiangdong, Zhang, Qin, Koning, D.J., de, Liu, Jianfeng, Qin Zhang, de Koning, Dirk-Jan, Zhang Qin, Zhe Zhang, Z., Ding, Z., Zhang Zhe, Ding Xiangdong, Piter Bijma, Jianfeng Liu, Xiangdong Ding, Zhe Zhang, Liu Jianfeng, de Koning, D.J.   +23 more
core   +1 more source