On the regularity of iterated hairpin completion of a single word [PDF]
arXiv, 2011 Hairpin completion is an abstract operation modeling a DNA bio-operation which receives as input a DNA strand $w = x\alpha y \calpha$, and outputs $w' = x \alpha y \bar{\alpha} \bar{x}$, where $\bar{x}$ denotes the Watson-Crick complement of $x$. In this paper, we focus on the problem of finding conditions under which the iterated hairpin completion of
arxiv
Inhibition of Tissue Factor Gene Induction and Activity Using a Hairpin Ribozyme [PDF]
, 2002 Erdal Çavuşoğlu +3 more
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Laser-assisted single-molecule refolding [PDF]
, 2011 Non-coding RNAs must fold into precise secondary and tertiary structures in order to perform the biological functions. Due to the flexibility of RNA, the RNA folding energy landscape can be rugged and full of local minimum (kinetic trap).
Zhao, Rui
core +1 more source
792. Antiviral Activity of the Hairpin Ribozyme in a Sindbis Virus Model System [PDF]
, 2003 openalex +1 more source
Identification of base-pair preferences for optimal cleavage : compensatory mutagenesis in positions Cs4 and G11 of the sCYMV hairpin ribozyme [PDF]
, 1998 The hairpin ribozyme is an RNA enzyme capable of cleaving RNA substrates in a site-specific and phosphodiester cleavage reaction. This property has made the ribozyme useful for gene therapy applications where cleavage of a specific RNA would be optimal ...
Radek, Katherine Amanda
core +1 more source
Hairpin Completion Distance Lower Bound [PDF]
arXivHairpin completion, derived from the hairpin formation observed in DNA biochemistry, is an operation applied to strings, particularly useful in DNA computing. Conceptually, a right hairpin completion operation transforms a string $S$ into $S\cdot S'$ where $S'$ is the reverse complement of a prefix of $S$. Similarly, a left hairpin completion operation
arxiv
Freely Diffusing Single Hairpin Ribozymes Provide Insights into the Role of Secondary Structure and Partially Folded States in RNA Folding [PDF]
, 2004 Goran Pljevaljčić +2 more
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Sensing complex regulatory networks by conformationally controlled hairpin ribozymes [PDF]
, 2004 S. Hani Najafi‐Shoushtari
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Efficacy and mode of action of hammerhead and hairpin ribozymes against various HIV-1 target sites [PDF]
, 2004 Graham Hotchkiss +2 more
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Chemical syntheses of inhibitory substrates of the RNA-RNA ligation reaction catalyzed by the hairpin ribozyme [PDF]
, 2004 Archna P. Massey
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