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Translocation intermediates of ubiquitin through an α-hemolysin nanopore: implications for detection of post-translational modifications.

Nanoscale, 2019
Nanopore based sensors constitute a promising approach to single molecule protein characterization being able, in principle, to detect sequences, structural elements and folding states of proteins and polypeptide chains.
Emma Letizia Bonome   +2 more
semanticscholar   +1 more source

Hemolysins: Pore-forming proteins in invertebrates

Experientia, 1990
Invertebrates possess lytic molecules which lyse vertebrate erythrocytes. In all the species studied so far, hemolytic activity depends on proteins which possess a wide range of reactivity. It is generally calcium-dependent and heat-labile, although calcium-independent and heat-stable hemolysins have also been detected.
openaire   +2 more sources

Unfolding and Translocation of Proteins Through an Alpha-Hemolysin Nanopore by ClpXP

2020
Proteins present a significant challenge for nanopore-based sequence analysis. This is partly due to their stable tertiary structures that must be unfolded for linear translocation, and the absence of regular charge density. To address these challenges, here we describe how ClpXP, an ATP-dependent protein unfoldase, can be harnessed to unfold and ...
Jeff, Nivala   +4 more
openaire   +2 more sources

All-Atom Molecular Dynamics Simulation of Protein Translocation through an α-Hemolysin Nanopore

The Journal of Physical Chemistry Letters, 2015
Nanopore sensing is attracting the attention of a large and varied scientific community. One of the main issues in nanopore sensing is how to associate the measured current signals to specific features of the molecule under investigation. This is particularly relevant when the translocating molecule is a protein and the pore is sufficiently narrow to ...
Di Marino, Daniele   +3 more
openaire   +4 more sources

Thermodynamics of a Protein Acylation:  Activation of Escherichia coli Hemolysin Toxin

Biochemistry, 2004
HlyC, hemolysin-activating lysine-acyltransferase, catalyses the acylation (from acyl-acyl carrier protein [ACP]) of Escherichia coli prohemolysin (proHlyA) on the epsilon-amino groups of specific lysine residues, 564 and 690 of the 1024 amino acid primary structure, to form hemolysin (HlyA).
Worsham, Lesa M.S.   +2 more
openaire   +3 more sources

Identification and characterization of two functional domains of the hemolysin translocator protein HlyD

Molecular and General Genetics MGG, 1994
Secretion of Escherichia coli hemolysin is mediated by a sec-independent pathway which requires the products of at least three genes, hlyB, hlyD and tolC. Two regions of HlyD were studied. The first region (region A), consisting of the 33-amino acid, C-terminal part of the HlyD protein, is predicted to form a potential helix-loop-helix structure.
R, Schülein   +4 more
openaire   +2 more sources

[4] Membrane protein crystallization: Application of sparse matrices to the α-hemolysin heptamer

1997
Publisher Summary The three-dimensional crystals of membrane proteins can be divided into two classes: (1) type I crystals, which consist of layers of molecules in which the hydrophobic contacts between the lipid-embedded portions of a protein mediate the intralayer interactions and the hydrophilic contacts between the domains exposed to aqueous ...
Langzhou, Song, J Eric, Gouaux
openaire   +2 more sources

Translocation Dynamics of Poly(styrenesulfonic acid) through an α-Hemolysin Protein Nanopore

Macromolecules, 2010
The transport of linear anionic poly(styrenesulfonic acid) (PSS) chains through an α-hemolysin protein channel, embedded in a lipid bilayer which is suspended on a glass nanopore membrane, is repor...
Qianjin Chen   +4 more
openaire   +1 more source

Immunoinformatic approach for multi-epitope vaccine design against Staphylococcus aureus based on hemolysin proteins

Journal of Molecular Graphics and Modelling
Staphylococcus aureus is a common bacterium that causes a variety of infections in humans. This microorganism produces several virulence factors, including hemolysins, which contribute to its disease-causing ability. The treatment of S. aureus infections typically involves the use of antibiotics.
Lennin Isaac Garrido-Palazuelos   +8 more
openaire   +2 more sources

Expression of the hemolysin operon in Escherichia coli is modulated by a nucleoid-protein complex that includes the proteins Hha and H-NS

Molecular and General Genetics MGG, 2000
J. Nieto   +6 more
semanticscholar   +1 more source

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