Results 161 to 170 of about 20,056,738 (185)

Protocol for Hi-C-based identification of chromosomal inversions in mosquitoes. [PDF]

STAR Protoc
Lukyanchikova V, Brusentsov II, Karagodin DA, Sharakhova MV, Sharakhov IV.   +4 more
europepmc   +1 more source

A comprehensive benchmark of single-cell Hi-C embedding tools. [PDF]

Nat Commun
Plummer D, Lang X, Zhang S, Li Y, Li J, Jin F.   +5 more
europepmc   +1 more source

Chromosomal-level genome assembly of Ichthyurus bourgeoisi Gestro using PacBio HiFi and Hi-C sequencing. [PDF]

Sci Data
Yang Y, Zhen Y, Yang Z, Wang J, Hua J, Liu H.   +5 more
europepmc   +1 more source

SHICEDO: single-cell Hi-C data enhancement with reduced over-smoothing. [PDF]

Bioinformatics
Huang J, Ma R, Strobel M, Hu Y, Ye T, Jiang T, Ma W.   +6 more
europepmc   +1 more source

SCW: building the whole-genome 3D structures based on extremely sparse single-cell Hi-C data. [PDF]

BMC Bioinformatics
Zhu H, Liu T, Shrestha B, Wang Z.
europepmc   +1 more source

BandHiC: a memory-efficient and user-friendly Python package for organizing and analyzing Hi-C matrices down to sub-kilobase resolution. [PDF]

BMC Genomics
Wang W, Li J, Ye Y, Gao L.
europepmc   +1 more source

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In-Nucleus Hi-C in Drosophila Cells

Journal of Visualized Experiments, 2021
The genome is organized into topologically associating domains (TADs) delimited by boundaries that isolate interactions between domains. In Drosophila, the mechanisms underlying TAD formation and boundaries are still under investigation. The application of the in-nucleus Hi-C method described here helped to dissect the function of architectural protein
Ayerim, Esquivel-López, Rodrigo, Arzate-Mejía, Rosario, Pérez-Molina, Mayra, Furlan-Magaril   +3 more
openaire   +2 more sources

Visualizing and Annotating Hi-C Data

2021
Epigenomics studies require the combined analysis and integration of multiple types of data and annotations to extract biologically relevant information. In this context, sophisticated data visualization techniques are fundamental to identify meaningful patterns in the data in relation to the genomic coordinates.
Pal K, Ferrari F
openaire   +3 more sources