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The human microbiome in evolution

open access: yesBMC Biology, 2017
The trillions of microbes living in the gut-the gut microbiota-play an important role in human biology and disease. While much has been done to explore its diversity, a full understanding of our microbiomes demands an evolutionary perspective. In this review, we compare microbiomes from human populations, placing them in the context of microbes from ...
Davenport, Emily R   +5 more
openaire   +4 more sources

DCMD: Distance-based Classification Using Mixture Distributions on Microbiome Data [PDF]

open access: yes, 2020
Current advances in next generation sequencing techniques have allowed researchers to conduct comprehensive research on microbiome and human diseases, with recent studies identifying associations between human microbiome and health outcomes for a number of chronic conditions.
arxiv   +1 more source

The Human Oral Microbiome [PDF]

open access: yesJournal of Bacteriology, 2010
ABSTRACT The human oral cavity contains a number of different habitats, including the teeth, gingival sulcus, tongue, cheeks, hard and soft palates, and tonsils, which are colonized by bacteria. The oral microbiome is comprised of over 600 prevalent taxa at the species level, with distinct subsets predominating at different ...
Bruce J. Paster   +12 more
openaire   +4 more sources

PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly [PDF]

open access: yesPeerJ, 2021
DNA de novo assembly can be used to reconstruct longer stretches of DNA (contigs), including genes and even genomes, from short DNA sequencing reads. Applying this technique to metagenomic data derived from archaeological remains, such as paleofeces and ...
Maxime Borry   +3 more
doaj   +2 more sources

SnapShot: The Human Microbiome

open access: yesCell, 2014
Trilions of bacteria populate the human body, with research efforts focusing on documenting the complexity of these communities and their contributions to physiological processes. This SnapShot presents several aspects of the human microbiome, including the characterization of the microbial species populating different body sites, the distribution of ...
Yoshiki Vázquez-Baeza   +3 more
openaire   +3 more sources

Antiradical and Cytoprotective Properties of Allium nutans L. Honey Against CCL4-Induced Liver Damage in Rats

open access: yesFrontiers in Pharmacology, 2021
The aim of this study is determine the in vitro and in vivo antiradical properties and the cytoprotective activity of Allium nutans L. honey extract. The antiradical properties of the extracts were investigated in rabbit alveolar macrophages and human ...
Shynggys Sergazy   +15 more
doaj   +1 more source

The Human Microbiome Project [PDF]

open access: yesNature, 2007
A strategy to understand the microbial components of the human genetic and metabolic landscape and how they contribute to normal physiology and predisposition to disease.
Jeffrey I. Gordon   +5 more
openaire   +3 more sources

Discovery of Three Toxic Proteins of Klebsiella Phage fHe-Kpn01

open access: yesViruses, 2020
The lytic phage, fHe-Kpn01 was isolated from sewage water using an extended-spectrum beta-lactamase-producing strain of Klebsiella pneumoniae as a host. The genome is 43,329 bp in size and contains direct terminal repeats of 222 bp.
Cindy M. Spruit   +4 more
doaj   +1 more source

The gut fungal and bacterial microbiota in pediatric patients with inflammatory bowel disease introduced to treatment with anti-tumor necrosis factor-α

open access: yesScientific Reports, 2022
Pediatric inflammatory bowel disease (PIBD) is a globally increasing chronic inflammatory disease associated with an imbalanced intestinal microbiota and treated with several treatment options, including anti-tumor necrosis factor alpha (TNF-α), such as ...
Rebecka Ventin-Holmberg   +7 more
doaj   +1 more source

Why Are Bifidobacteria Important for Infants?

open access: yesMicroorganisms, 2022
The presence of Bifidobacterium species in the maternal vaginal and fecal microbiota is arguably an evolutionary trait that allows these organisms to be primary colonizers of the newborn intestinal tract.
Gerrit A. Stuivenberg   +3 more
doaj   +1 more source

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