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Prediction of protein structure from ideal forms

Proteins: Structure, Function, and Bioinformatics, 2008
AbstractFor many years it has been accepted that the sequence of a protein can specify its three‐dimensional structure. However, there has been limited progress in explaining how the sequence dictates its fold and no attempt to do this computationally without the use of specific structural data has ever succeeded for any protein larger than 100 ...
Vijayalakshmi Chelliah   +8 more
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Searching for the ideal forms of proteins

Biochemical Society Transactions, 2000
A modification of the Structure Alignment Program (SAP), combined with a novel automatic method for the definition of structural elements, correctly identified the core folds of a variety of small β/α proteins when compared with a series of ideal architectures.
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Ideal amino acid profiles as a basis for feed protein evaluation [PDF]

open access: possibleLivestock Production Science, 1998
Abstract The most important single factor affecting the efficiency of protein utilization is the profile of digestible essential amino acids entering the small intestine. Assuming a constant ideal amino acid profile of absorbed protein the requirements of all amino acids can be calculated when the requirement of one individual amino acid has been ...
Boisen, Sigurd   +2 more
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Current Perspectives of Protein in Bone Tissue Engineering: Bone Structure, Ideal Scaffolds, Fabrication Techniques, Applications, Scopes, and Future Advances.

ACS Applied Bio Materials
In view of their exceptional approach, excellent inherent biocompatibility and biodegradability properties, and interaction with the local extracellular matrix, protein-based polymers have received attention in bone tissue engineering, which is a ...
M. U. Aslam Khan   +3 more
semanticscholar   +1 more source

Conformational and geometrical properties of idealized β-barrels in proteins

Journal of Molecular Biology, 1990
An equation for calculating the distances between the atoms involved in forming an idealized hydrogen bond in a parallel or antiparallel beta-barrel has been derived by adjusting the corresponding data given by Pauling and Corey for a beta-sheet. Based on these distances, a geometrical optimization method was developed, by which one can generate ...
K C, Chou   +3 more
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Analysis of the thermodynamic non-ideality of proteins by sedimentation equilibrium experiments

Biophysical Chemistry, 1999
This paper presents a modified method to determine experimentally the second virial coefficient of protein solutions by sedimentation equilibrium experiments. The improvement is based on the possibility of fitting simultaneously up to seven radial concentration distribution curves of solutions with different loading concentrations.
Otto Ristau, Joachim Behlke
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Peptide‐mass fingerprinting and the ideal covering set for protein characterisation

ELECTROPHORESIS, 1997
AbstractThe rules that govern the dynamics of protein characterisation by peptide‐mass fingerprinting (PMF) were investigated through multiple interrogations of a nonredundant protein database. This was achieved by analysing the efficiency of identifying each entry in the entire database via perfect in silico digestion with a series of 20 pseudo ...
Timothy G. Littlejohn   +2 more
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microcrystalline proteins an ideal benchmark for methodology development

2012
NMR is one of the most powerful methods for imaging of biomolecules. This book is the ultimate NMR guide for researchers in the biomedical community and gives not only background and practical tips but also a forward looking view on the future of NMR in systems biology.
W. T. Franks   +6 more
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Protein Microarray: An Ideal Platform for Systems Biology

2012
Systems biology intends to understand the biological systems as a whole, it may hold the key for eventually cure of some of the most challenging complex diseases, such as cancer, diabetes, obesity, mental disorders and etc. The major driving forces of systems biology are high-throughput “-omics” technologies, i.e., genomics, transcriptomics, proteomics
Sheng-Ce Tao   +5 more
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Soy Protein/Clay Bionanocomposites as Ideal Packaging Materials

Polymer-Plastics Technology and Engineering, 2012
Soy protein-based bionanocomposites were prepared via solution intercalation with incorporation of the organoclay of different concentrations. The composites were characterized through UV-Visible and Fourier Transform Infrared (FTIR) spectroscopy, X-ray Diffraction (XRD) and Transmission Electron Microscopy (TEM).
Pragnya P. Priyadarshini   +2 more
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