Results 31 to 40 of about 4,606,382 (149)

Identification of Intrinsically Disordered Proteins and Regions by Length-Dependent Predictors Based on Conditional Random Fields

open access: yesMolecular Therapy: Nucleic Acids, 2019
Accurate identification of intrinsically disordered proteins/regions (IDPs/IDRs) is critical for predicting protein structure and function. Previous studies have shown that IDRs of different lengths have different characteristics, and several ...
Yumeng Liu   +3 more
doaj   +1 more source

Intrinsically disordered proteins: modes of binding with emphasis on disordered domains

open access: yesOpen Biology, 2021
Our notions of protein function have long been determined by the protein structure–function paradigm. However, the idea that protein function is dictated by a prerequisite complementarity of shapes at the binding interface is becoming increasingly ...
Owen Michael Morris   +2 more
doaj   +1 more source

Biophysical and Structural Study of Intrinsically Disordered Protein (IDP), Nopp140 [PDF]

open access: yesBiophysical Journal, 2013
Human Nopp140 is a highly phosphorylated nucleolus protein and involved in the biogenesis of the nucleolus. It interacts with a variety of proteins related to the synthesis and assembly of the ribosome including a ubiquitous protein kinase CK2 which mediates cell growth and prevents apoptosis.
Na, Jung-Hyun   +4 more
openaire   +1 more source

DMFpred: Predicting protein disorder molecular functions based on protein cubic language model.

open access: yesPLoS Computational Biology, 2022
Intrinsically disordered proteins and regions (IDP/IDRs) are widespread in living organisms and perform various essential molecular functions. These functions are summarized as six general categories, including entropic chain, assembler, scavenger ...
Yihe Pang, Bin Liu
doaj   +1 more source

Long-range structural preformation in yes-associated protein precedes encounter complex formation with TEAD

open access: yesiScience, 2022
Summary: Yes-associated protein (YAP) is a partly intrinsically disordered protein (IDP) that plays a major role as the downstream element of the Hippo pathway.
Michael Feichtinger   +6 more
doaj   +1 more source

Unreported intrinsic disorder in proteins: Building connections to the literature on IDPs [PDF]

open access: yesIntrinsically Disordered Proteins, 2014
This review opens a new series entitled "Unreported intrinsic disorder in proteins." The goal of this series is to bring attention of researchers to an interesting phenomenon of missed (or overlooked, or ignored, or unreported) disorder. This series serves as a companion to "Digested Disorder" which provides a quarterly review of papers on ...
openaire   +3 more sources

Prediction of protein-protein interaction sites in intrinsically disordered proteins

open access: yesFrontiers in Molecular Biosciences, 2022
Intrinsically disordered proteins (IDPs) participate in many biological processes by interacting with other proteins, including the regulation of transcription, translation, and the cell cycle.
Ranran Chen   +10 more
doaj   +1 more source

PhosIDP: a web tool to visualize the location of phosphorylation sites in disordered regions

open access: yesScientific Reports, 2021
Charge is a key determinant of intrinsically disordered protein (IDP) and intrinsically disordered region (IDR) properties. IDPs and IDRs are enriched in sites of phosphorylation, which alters charge.
Sonia T. Nicolaou   +4 more
doaj   +1 more source

Structural characterization of intrinsically disordered proteins by NMR spectroscopy. [PDF]

open access: yes, 2013
Recent advances in NMR methodology and techniques allow the structural investigation of biomolecules of increasing size with atomic resolution. NMR spectroscopy is especially well-suited for the study of intrinsically disordered proteins (IDPs) and ...
Contreras-Martos, Sara   +7 more
core   +1 more source

Phanto-IDP: compact model for precise intrinsically disordered protein backbone generation and enhanced sampling

open access: yesBriefings in Bioinformatics, 2023
Abstract The biological function of proteins is determined not only by their static structures but also by the dynamic properties of their conformational ensembles. Numerous high-accuracy static structure prediction tools have been recently developed based on deep learning; however, there remains a lack of efficient and accurate methods ...
Junjie Zhu   +6 more
openaire   +2 more sources

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