The mitochondrial genome of the bioluminescent fish Malacosteus niger Ayres, 1848 (Stomiidae, Actinopterygii) is large and complex, and contains an inverted-repeat structure [PDF]
ZooKeys, 2023 We determined the complete mitogenome sequence of the bioluminescent fish Malacosteus niger using long-read sequencing technologies. The 21,263 bp mitogenome features a complex structure with two copies of a 1198-bp inverted-repeat and a region of 2616 ...
Romain Gastineau +6 more
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Evidence for active maintenance of inverted repeat structures identified by a comparative genomic approach. [PDF]
PLoS ONE, 2007 Inverted repeats have been found to occur in both prokaryotic and eukaryotic genomes. Usually they are short and some have important functions in various biological processes.
Guoyan Zhao +3 more
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Mechanism for inverted-repeat recombination induced by a replication fork barrier [PDF]
Nature Communications, 2022 Replication stress and abundant repetitive sequences have emerged as primary conditions underlying genomic instability in eukaryotes. Here the authors use a prokaryotic Tus/Ter barrier designed to induce transient replication fork stalling near inverted ...
Léa Marie, Lorraine S. Symington
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Plastid genomes of the North American Rhus integrifolia-ovata complex and phylogenomic implications of inverted repeat structural evolution in Rhus L. [PDF]
PeerJ, 2020 Plastid genomes (plastomes) represent rich sources of information for phylogenomics, from higher-level studies to below the species level. The genus Rhus (sumac) has received a significant amount of study from phylogenetic and biogeographic perspectives,
Craig F. Barrett
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Dispersed repeats and inverted repeat expansion drive major plastomic rearrangements in <i>Calliandra haematocephala</i> (Leguminosae: Mimoseae). [PDF]
Front Plant SciZhao L +7 more
europepmc +3 more sources
Unexpected invasion of miniature inverted-repeat transposable elements in viral genomes [PDF]
Mobile DNA, 2018 Background Transposable elements (TEs) are common and often present with high copy numbers in cellular genomes. Unlike in cellular organisms, TEs were previously thought to be either rare or absent in viruses.
Hua-Hao Zhang +21 more
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Plastome analysis unveils Inverted Repeat (IR) expansion and positive selection in Sea Lavenders (Limonium, Plumbaginaceae, Limonioideae, Limonieae). [PDF]
PhytoKeys, 2021 Darshetkar AM +9 more
europepmc +2 more sources
Lost and Found: Return of the Inverted Repeat in the Legume Clade Defined by Its Absence. [PDF]
Genome Biol Evol, 2019 Choi IS, Jansen R, Ruhlman T.
europepmc +3 more sources
airpg: automatically accessing the inverted repeats of archived plastid genomes
BMC Bioinformatics, 2021 Background In most flowering plants, the plastid genome exhibits a quadripartite genome structure, comprising a large and a small single copy as well as two inverted repeat regions. Thousands of plastid genomes have been sequenced and submitted to public
Tilman Mehl, Michael Gruenstaeudl
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Size of gene specific inverted repeat--dependent gene deletion In Saccharomyces cerevisiae. [PDF]
PLoS ONE, 2013 We describe here an approach for rapidly producing scar-free and precise gene deletions in S. cerevisiae with high efficiency. Preparation of the disruption gene cassette in this approach was simply performed by overlap extension-PCR of an invert repeat ...
Chanyuen Lim +5 more
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