airpg: automatically accessing the inverted repeats of archived plastid genomes
BMC Bioinformatics, 2021 Background In most flowering plants, the plastid genome exhibits a quadripartite genome structure, comprising a large and a small single copy as well as two inverted repeat regions. Thousands of plastid genomes have been sequenced and submitted to public
Tilman Mehl, Michael Gruenstaeudl
doaj +1 more source
Miniature inverted-repeat transposable elements: discovery, distribution, and activity. [PDF]
Genome, 2013 I. Fattash +6 more
semanticscholar +2 more sources
Size of gene specific inverted repeat--dependent gene deletion In Saccharomyces cerevisiae. [PDF]
PLoS ONE, 2013 We describe here an approach for rapidly producing scar-free and precise gene deletions in S. cerevisiae with high efficiency. Preparation of the disruption gene cassette in this approach was simply performed by overlap extension-PCR of an invert repeat ...
Chanyuen Lim +5 more
doaj +1 more source
INVERTED REPEATS IN VIRAL GENOMES [PDF]
Fluctuation and Noise Letters, 2005 We investigate 738 complete genomes of viruses to detect the presence of short inverted repeats. The number of inverted repeats found is compared with the prediction obtained for a Bernoullian and for a Markovian control model. We find as a statistical regularity that the number of observed inverted repeats is often greater than the one expected in ...
Spano, M. +3 more
openaire +2 more sources
The complete chloroplast genome of Plateau herb Chesneya acaulis (Fabaceae)
Mitochondrial DNA. Part B. Resources, 2021 Chesneya acaulis is a perennial herb, which restricts in Xizang (Tibet) of China, Afghanistan, and Pakistan. The complete chloroplast genome was sequenced using the Illumina Hiseq X-Ten platform.
Li-Yun Nie +4 more
doaj +1 more source
detectIR: a novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation. [PDF]
PLoS ONE, 2014 Inverted repeats are present in abundance in both prokaryotic and eukaryotic genomes and can form DNA secondary structures--hairpins and cruciforms that are involved in many important biological processes.
Congting Ye +3 more
doaj +1 more source
The first discovery of Tc1 transposons in yeast
Frontiers in Microbiology, 2023 BackgroundIdentification of transposons without close homologs is still a difficult task. IS630/Tc1/mariner transposons, classified into a superfamily, are probably the most widespread DNA transposons in nature.
Jia Chang +10 more
doaj +1 more source
The complete chloroplast genome of ornamental and medicinal Callerya dielsiana (Fabaceae)
Mitochondrial DNA. Part B. Resources, 2022 Callerya dielsiana is a Chinese endemic tropical/subtropical liana. We sequenced the complete chloroplast genome with the Illumina Hiseq X-Ten platform. The genome is obtained with 132,301 bp in length, lacking an inverted repeat (IR) region, contains 4 ...
Qi-Fei Yi +6 more
doaj +1 more source
Identification of the transcriptional regulator NcrB in the nickel resistance determinant of Leptospirillum ferriphilum UBK03. [PDF]
PLoS ONE, 2011 The nickel resistance determinant ncrABCY was identified in Leptospirillum ferriphilum UBK03. Within this operon, ncrA and ncrC encode two membrane proteins that form an efflux system, and ncrB encodes NcrB, which belongs to an uncharacterized family ...
Tao Zhu +4 more
doaj +1 more source
Mitochondrial DNA. Part B. Resources, 2021 We sequenced the chloroplast genome of Poterioochromonas malhamensis (Pringsheim) R.A.Andersen strain SZCZR2049, which originates from Van Lake in Turkey.
Romain Gastineau +5 more
doaj +1 more source