Long-read sequencing reveals atypical mitochondrial genome structure in a New Zealand marine isopod
Royal Society Open Science, 2022 Most animal mitochondrial genomes are small, circular and structurally conserved. However, recent work indicates that diverse taxa possess unusual mitochondrial genomes.
William S. Pearman +4 more
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Recombination-restarted replication makes inverted chromosome fusions at inverted repeats [PDF]
Nature, 2012 Impediments to DNA replication are known to induce gross chromosomal rearrangements (GCRs) and copy-number variations (CNVs). GCRs and CNVs underlie human genomic disorders and are a feature of cancer. During cancer development, environmental factors and oncogene-driven proliferation promote replication stress.
Mizuno, Ken’Ichi +4 more
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Bridging PCR: An Efficient and Reliable Scheme Implemented for Genome-Walking
Current Issues in Molecular Biology, 2023 The efficacy of the available genome-walking methods is restricted by low specificity, high background, or composite operations. We herein conceived bridging PCR, an efficient genome-walking approach.
Zhiyu Lin +3 more
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Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster. [PDF]
PLoS ONE, 2012 Transposable elements are mobile DNA sequences that integrate into host genomes using diverse mechanisms with varying degrees of target site specificity.
Raquel S Linheiro, Casey M Bergman
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Blocking oligonucleotides improve sequencing through inverted repeats [PDF]
BioTechniques, 2003 1.Fajkus, J., M. Simickova, and J. Malaska. 2002. Tiptoeing to chromosome tips: facts, promises and perils of today‘s human telomere biology. Philos. Trans. R. Soc. Lond. B Biol. Sci. 357:545-562. 2.Kim, N.W., M.A. Piatyszek, K.R. Prowse, C.B. Harley, M.D. West, P.L. Ho, G.M. Coviello, W.E. Wright, et al. 1994.
Dominic Esposito +2 more
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Enrichment of G4DNA and a Large Inverted Repeat Coincide in the Mitochondrial Genomes of Termitomyces. [PDF]
Genome Biol Evol, 2019 Nieuwenhuis M +4 more
europepmc +3 more sources
Fast cloning inverted repeats for RNA interference [PDF]
RNA, 2006 Double-stranded RNA (dsRNA) can induce post-transcriptional gene silencing in a wide variety of organisms. Commonly, inverted repeats are used to produce dsRNA to silence genes of interest. However, cloning inverted repeats still remains a rate-limiting step for widely applying this technique.
Bao, Sujin, Cagan, Ross L
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European Journal of Entomology, 2011 Determining the genomic structure of diapause-associated transcripts (DAT) -2 and -3 led to the isolation of four novel miniature subterminal inverted repeat-like elements (MSITE): Mild-1, -2, -3 and -4.
George D. YOCUM +3 more
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Full-length chloroplast genome of Dongxiang wild rice reveals small single-copy region switching
Frontiers in Plant Science, 2022 BackgroundPlant chloroplast DNA (cpDNA) typically has a circular structure, including a large single-copy region (LSC), a small single-copy region (SSC) and two inverted repeats (IR1 and IR2). The organization of these four elementary regions LSC-IR1-SSC-
Jianguang Liang +8 more
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The Unusual Properties of the AAV Inverted Terminal Repeat
Human Gene Therapy, 2020 Although the sequence of the AAV inverted terminal repeat has been known for 40 years, there are still unanswered questions about functions attributable to the terminal 125 nucleotides.
K. Berns
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