Results 41 to 50 of about 1,046,746 (344)

Mutagenic inverted repeat assisted genome engineering (MIRAGE) [PDF]

open access: yesNucleic Acids Research, 2008
Here we describe a one-step method to create precise modifications in the genome of Saccharomyces cerevisiae as a tool for synthetic biology, metabolic engineering, systems biology and genetic studies. Through homologous recombination, a mutagenesis cassette containing an inverted repeat of selection marker(s) is integrated into the genome.
Nair, Nikhil U., Zhao, Huimin
openaire   +2 more sources

MITE Tracker: an accurate approach to identify miniature inverted-repeat transposable elements in large genomes

open access: yesBMC Bioinformatics, 2018
Miniature inverted-repeat transposable elements (MITEs) are short, non-autonomous class II transposable elements present in a high number of conserved copies in eukaryote genomes. An accurate identification of these elements can help to shed light on the
J. Crescente   +3 more
semanticscholar   +1 more source

A complete chloroplast genome of Rubia yunnanensis Diels (Rubiaceae), a traditional Chinese herb endemic to China

open access: yesMitochondrial DNA. Part B. Resources, 2022
Rubia yunnanensis Diels 1912 (Rubiaceae) is a plant used in traditional Chinese medicine. We here assembled a complete chloroplast (cp) genome for R. yunnanensis using Illumina HiSeq reads. The genome is 155,108 bp in length.
Shuying Zhao   +3 more
doaj   +1 more source

Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species

open access: yesBMC Plant Biology, 2019
Miniature inverted-repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons are ubiquitous in plants genomes, and highly important in their evolution and diversity.
Yan Liu   +8 more
semanticscholar   +1 more source

ON INVERTED REPEAT SEQUENCES IN CHROMOSOMAL DNA [PDF]

open access: yesGenetics, 1976
ABSTRACT It is suggested that chromosomal DNA should contain a class of palindromic reverse repeats, comparable in number to that of genes themselves, which are formed as follows: (1) a transcription-termination signal that follows the gene plus (on the complementary strand and located as near to the "anti-gene" as possible); (2) a ...
B, Wallace, T L, Kass
openaire   +2 more sources

Comparative Genomic Analysis Reveals the Mechanism Driving the Diversification of Plastomic Structure in Taxaceae Species

open access: yesFrontiers in Genetics, 2020
Inverted repeat (IR) regions in the plastomes from land plants induce homologous recombination, generating isomeric plastomes. While the plastomes of Taxaceae species often lose one of the IR regions, considerable isomeric plastomes were created in ...
Yue Zhang   +5 more
doaj   +1 more source

Inverted repeated sequences in yeast nuclear DNA [PDF]

open access: yesNucleic Acids Research, 1980
The inverted repeated sequences (foldback DNA) of yeast nuclear DNA have been examined by electron microscopy and hydroxyapatite chromatography. Of the inverted repeat structures seen in the electron microscope, 34% were hairpins and 66% had a single stranded loop at the end of a duplex stem.
H L, Klein, S K, Welch
openaire   +2 more sources

MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs)

open access: yesJournal of Integrative Bioinformatics, 2017
Miniature inverted repeat transposable element (MITE) is a short transposable element, carrying no protein-coding regions. However, its high proliferation rate and sequence-specific insertion preference renders it as a good genetic tool for both natural ...
Ge Ruiquan   +5 more
doaj   +1 more source

Divergent copies of the large inverted repeat in the chloroplast genomes of ulvophycean green algae

open access: yesScientific Reports, 2017
The chloroplast genomes of many algae and almost all land plants carry two identical copies of a large inverted repeat (IR) sequence that can pair for flip-flop recombination and undergo expansion/contraction. Although the IR has been lost multiple times
M. Turmel, C. Otis, C. Lemieux
semanticscholar   +1 more source

Long-reads reveal that Rhododendron delavayi plastid genome contains extensive repeat sequences, and recombination exists among plastid genomes of photosynthetic Ericaceae [PDF]

open access: yesPeerJ, 2020
Background Rhododendron delavayi Franch. var. delavayi is a wild ornamental plant species in Guizhou Province, China. The lack of its plastid genome information seriously hinders the further application and conservation of the valuable resource.
Huie Li, Qiqiang Guo, Qian Li, Lan Yang
doaj   +2 more sources

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