Results 41 to 50 of about 159,254 (282)

MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs)

Journal of Integrative Bioinformatics, 2017
Miniature inverted repeat transposable element (MITE) is a short transposable element, carrying no protein-coding regions. However, its high proliferation rate and sequence-specific insertion preference renders it as a good genetic tool for both natural ...
Ge Ruiquan, Mai Guoqin, Zhang Ruochi, Wu Xundong, Wu Qing, Zhou Fengfeng   +5 more
doaj   +1 more source

Long-reads reveal that Rhododendron delavayi plastid genome contains extensive repeat sequences, and recombination exists among plastid genomes of photosynthetic Ericaceae [PDF]

PeerJ, 2020
Background Rhododendron delavayi Franch. var. delavayi is a wild ornamental plant species in Guizhou Province, China. The lack of its plastid genome information seriously hinders the further application and conservation of the valuable resource.
Huie Li, Qiqiang Guo, Qian Li, Lan Yang
doaj   +2 more sources

Full-length chloroplast genome of Dongxiang wild rice reveals small single-copy region switching

Frontiers in Plant Science, 2022
BackgroundPlant chloroplast DNA (cpDNA) typically has a circular structure, including a large single-copy region (LSC), a small single-copy region (SSC) and two inverted repeats (IR1 and IR2). The organization of these four elementary regions LSC-IR1-SSC-
Jianguang Liang, Rui Chen, Rui Chen, Fantao Zhang, Qian Wang, Yingxia Yang, Mingjie Lv, Shuangyong Yan, Shan Gao   +8 more
doaj   +1 more source

A role for non-B DNA forming sequences in mediating microlesions causing human inherited disease [PDF]

, 2015
Missense/nonsense mutations and micro-deletions/micro-insertions of
Aguilera, Bacolla, Bacolla, Bacolla, Bacolla, Bacolla, Ball, Belotserkovskii, Bharti, Biffi, Bochman, Boyer, Brooks, Bzymek, Cebrián, Chen, Chen, Chuzhanova, Clark, Cooper, Cooper, Cooper, De, Ding, Dong, Du, Fleming, Greenblatt, Guo, Gusev, Iyer, Jain, Jain, Javadekar, Jeitany, Kaushik Tiwari, Kondrashov, Kouzine, Kregten, Kunkel, Kunkel, Kunkel, Lam, Lee, Levinson, León-Ortiz, Lopes, Lovett, Lu, Majumdar, Margolin, Morikawa, Mort, Mukherjee, Mukherjee, Murat, Nambiar, Patel, Raghavan, Reeves, Rosche, Rouleau, Sanders, Schofield, Sen, Sharma, Sinden, Sinden, Spurlock, Stenson, Stenson, Tappino, Vasquez, Verdin, Wang, Wells, Wickramasinghe, Williams, Wu, Wu, Wu, Wu, Yang, You, Zhao, Zhao, Zhou   +86 more
core   +1 more source

PCIR: a database of Plant Chloroplast Inverted Repeats [PDF]

Database, 2019
Abstract Inverted repeats (IRs) serve as potential biomarkers for genomic instability, DNA replication and other genetic processes. However, little information can be found in databases to help researchers recognize potential IR nucleotides, explore junction sites and annotate related functional genes. Plant Chloroplast Inverted Repeats (
Ying Gao, Zhiguo Liu, Ying Zhao, Rui Zhang, Huayang Li, Yudong Chen, Long Yang, Fangfang Ge   +7 more
openaire   +3 more sources

Topology Optimization of Lattice Support Structure for Cantilever Beams Fabricated Via Laser Powder Bed Fusion

Advanced Engineering Materials, EarlyView., 2023
A numerical scheme is presented to design a lattice support for metallic components additively built via laser powder bed fusion. Results show that thermal‐induced distortion can be respectively reduced by 69%, 58%, and 50% in comparison to a uniform lattice, a fully solid support, and a truss‐based lattice support.
Jiazheng Hu, Marjan Molavi‐Zarandi, Damiano Pasini   +2 more
wiley   +1 more source

Complete chloroplast genome of Caragana kozlowii, an alpine shrub endemic to China

Mitochondrial DNA. Part B. Resources, 2019
Endemic to the southeast boundary of Tibet plateau, the medicinal alpine shrub Caragana kozlowii is a threatened species. The genetic and molecular data about it is insufficient. In this paper, the complete chloroplast (cp) genome sequence of C. kozlowii
Chuang-Yun Wang, Na Duan, Zhi-Tao Wu, Bing-Bing Liu   +3 more
doaj   +1 more source

Investigating the DNA-Binding Site for VirB, a Key Transcriptional Regulator of Shigella Virulence Genes, Using an In Vivo Binding Tool [PDF]

, 2019
The transcriptional anti-silencing and DNA-binding protein, VirB, is essential for the virulence of Shigella species and, yet, sequences required for VirB-DNA binding are poorly understood.
Karabachev, Alexander D., Karney, Monika M.A., McKenna, Joy A., Millar, Makensie E., Potoceck, Eliese A., Weatherspoon-Griffin, Natasha, Wing, Helen J.   +6 more
core   +2 more sources

A cruciform-dumbbell model for inverted dimer formation mediated by inverted repeats [PDF]

Nucleic Acids Research, 1997
Small inverted repeats (small palindromes) on plasmids have been shown to mediate a recombinational rearrangement event in Escherichia coli leading to the formation of inverted dimers (giant palindromes). This recombinational rearrangement event is efficient and independent of RecA and RecBCD.
Ching T. Lin, Leroy-Fong Liu, Yi Lisa Lyu   +2 more
openaire   +3 more sources

The plastid genome sequence of the invasive plant common Ragweed (Ambrosia artemisiifolia, Asteraceae)

Mitochondrial DNA. Part B. Resources, 2017
In the current study, we present the complete chloroplast genome sequence of Ambrosia artemisiifolia. The genome is 152,223 bp long and consist of 83 protein coding genes, 38 tRNAs, and four rRNAs duplicated in the inverted repeat.
Ali Amiryousefi, Jaakko Hyvönen, Péter Poczai   +2 more
doaj   +1 more source