Results 21 to 30 of about 33,232 (253)
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana [PDF]
, 2007 We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates were manually curated.Hosokawa, S., Kawashima, H., Zhao, Q., Kawahara, Y., Zhao, Q., Imanishi, T., Haberer, G., Seki, M., Komatsu, S., Thongjuea, S., Oota, S., Wang, A., Takeda, J.-i., Bureau, T., Ikawa, H., Hokari, H., Zhang, H., Schoof, H., Yamamoto, N., Khurana, J.P., Tanaka, T., Tanino, M., Thongjuea, S., Sakai, Y., Ito, Y., Tanaka, T., Kawamura, T., Antonio, B. A., Harada, E., Messing, J., Saichi, N., Fuks, G., Hirochika, H., Koyanagi, K. O., Sato, Y., Sakai, H., Tyagi, A. K., Bureau, T., Kawamura, T., Aono, H., Ohyanagi, H., Burr, B., Barrero, R.A., Okido, T., Tsugane, M., Shimizu, Y., Osato, N., Hilton, P.B., Wang, A., Yu, Y., Hoen, D., Matsuya, A., Barrero, R. A., Bruskiewich, R., Nam, J., Apweiler, R., Shibata, M., Miyao, A., Miyao, A., Schoof, H., Fujii, Y., Quetier, F., Lieberherr, D., Nurimoto, S., Burr, B., Hiraki, A.T., Sakai, H., Tatusova, T., Hoen, D., Sakata, K., Sato, F., Lin, Y. C., Sakurai, T., Higo, K., Lonsdale, D., Nurimoto, S., Hiraki, A. T., Habara, T., Shimizu, Y., Ito, Y., Lin, Y-C, Tsugane, M., McCombie, W. R., Okido, T., Namiki, N., Kawahara, Y., Apweiler, R., Mulder, N., Kawashima, H., Matsumoto, T., Quetier, F., Osato, N., Hsing, Y., Hilton, P. B., Shinso, Y., Aono, H., Ohyanagi, H., Yamasaki, C., Sakai, Y., Yamaguchi, K., Vanavichit, A., Kubooka, H., O'Donovan, C., Komatsu, S., Matsuya, A., Fuks, G., Lieberherr, D., Antonio, B.A., Yamamoto, N., OOta, S., Hokari, H., Sakata, K., Raghuvanshi, S., Jaiswal, P., Burr, F., Hsing, Y. I., Smith-White, B., Khurana, J. P., O'Donovan, C., Vanavichit, A., De Oliveira, A. C., Habara, T., Ikawa, H., Shibata, M., Bruskiewich, R., Koyanagi, K.O., Gojobori, T., Harada, E., Raghuvanshi, S., Hosokawa, S., Sato, F., Seki, M., Higo, K., Yamamoto, M., Palmer, L.E., Kubooka, H., Kikuchi, S., Sasaki, T., Yu, Y., Han, B., Nam, J., Costa de Oliveira, A., Palmer, L. E., Lonsdale, D., McCombie, W.R., Shinso, Y., Kanno, M., Tatusova, T., Yamasaki, C., Haberer, G., Numa, H., Yamaguchi, K., Hirochika, H., Ikeo, K., Ikeo, K., Todokoro, F., Burr, F., Zhang, H., Singh, N. K., Kanno, M., Smith-White, B., Wing, R.A., Sato, Y., Nagamura, Y., Wing, R. A., Fujii, Y., Jaiswal, P., Messing, J., Kikuchi, S., Saichi, N., Namiki, N., Tyagi, A.K., Itoh, T., Tanino, M., Itoh, T., Imanishi, T., Sakurai, T., Todokoro, F., Mulder, N., Matsumoto, T., Singh, N.K., Nagamura, Y., Yamamoto, M., Shinozaki, K., Takeda, J. I., Han, B., Sasaki, T., Numa, H., Shinozaki, K., Gojobori, T. +189 morecore +2 more sourcesTarget Lines for in Planta Gene Stacking in Japonica Rice
International Journal of Molecular Sciences, 2022 The clustering of transgenes at a chromosome location minimizes the number of segregating loci that needs to be introgressed to field cultivars. Transgenes could be efficiently stacked through site-specific recombination and a recombinase-mediated in planta gene stacking process was described previously in tobacco based on the Mycobacteriophage Bxb1 ...Ruyu Li, Zhiguo Han, Qian Yin, Meiru Li, Mingyong Zhang, Zhenzhen Li, Ping Wang, Li Jiang, David W. Ow +8 moreopenaire +2 more sourcesHybrid Vigour and Hybrid Mimics in Japonica Rice
Agronomy, 2022 In crop improvement programs, hybrid vigour (heterosis) is an important breeding strategy but the molecular mechanisms of hybrid vigour are still unclear. Grain yield declines after F1 generation due to phenotypic segregation. We found that, at the early seedling stage in hybrids derived from the temperate japonica rice varieties ‘Doongara’ and ‘Reiziq’You Zhang, Ben Ovenden, Yao He, Wenwei Ye, Xianjun Wu, William James Peacock, Elizabeth S. Dennis +6 moreopenaire +2 more sourcesThe Rice Annotation Project Database (RAP-DB): 2008 update [PDF]
, 2008 The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be ...Raghuvanshi S, Hosokawa, S., SMITH-WHITE, B, Zhao, Q., An, G., Tateno, Y., Imanishi, T., Nobushima, S., SUZUKI, M, NOBUTA, K, Oota, S., Tatusova T, Nakaoka, H., Lu, C., Shinso Y, Takeda, J.-i., Todokoro F, Yamamoto, N., Khurana, J.P., OOta S, Tanaka, T., Kim, H., Sakai, Y., Piegu B, Ito, Y., Hosokawa S, Bruskiewich, R. M., Kubooka H, Harada, E., Messing, J., Lin, Yao-Cheng, HAN, B, Meyers BC, Wei, F-J, Koyanagi, K. O., Sakai, H., Ikeo K, Ohyanagi, H., IKAWA, H, Meyers, B.C., Barrero, R.A., Aono R, Okido, T., Zuccolo, A., HARADA, E, KOYANAGI, KO, Green PJ, Sasaki T, Sato Y, Bureau TE, Nobuta, K., Barrero, R. A., Yamasaki C, Shibata, M., NUMA, H, Zhao Q, Christie, K.R., Lieberherr, D., Kanno M, Panaud O, Bureau, T.E., Souvorov A, MESSING, J, An, G., Messing J, KIM, H, Hsing, Y-i, PIEGU, B, Lonsdale, D., MEYERS, BC, Bin, H., Ito, Y., HABERER, G, Tanino M, BRUSKIEWICH, RM, Aono, R., Namiki, N., Green, P. J., Sanbonmatsu, R., SAKAI, Y, Fujisawa, M., Zuccolo, A., HABARA, T, Shinso, Y., Fujisawa, M., Ohyanagi, H., Yamasaki, C., HOEN, DR, Christie, K. R., Yamaguchi, K., Kramer, M. R., SHIBATA, M, Kubooka, H., Tada, M., Echeverria M., GREEN, PJ, Yamamoto, N., OOta, S., TANAKA, T, Hoen, D. R., Numa H, LONSDALE, D, An, S., Piegu, B., McCombie RW, Echeverria, M., SAKAI, H, Tateno Y, Habara, T., Ikawa, H., TYAGI, AK, Koyanagi, K.O., Itoh T, Gojobori, T., Harada, E., Raghuvanshi, S., Bureau, T. E., Hosokawa, S., Lin YC, Kramer MR, ANTONIO, BA, Yamamoto, M., Apweiler R, Kubooka, H., TATUSOVA, T, Kawahara Y, Suzuki M, TAKEDA, JI, Lonsdale, D., Antonio BA, Sanbonmatsu, R., Shinso, Y., KHURANA, JP, IMANISHI, T, Kanno, M., Tatusova, T., Hsing YI, FUJISAWA, M, Haberer, G., Numa, H., Yamaguchi, K., Ikeo, K., Todokoro, F., Ikeo, K., Chaparro, C., Singh, N. K., ECHEVERRIA, M, Smith-White, B., Ohyanagi H, Nagamura, Y., Wei, F. J., Wing, R. A., Habara T, NAKAOKA, H, PANAUD, O, WEI, FJ, Fujii, Y., Fuks G, Namiki N, Kikuchi, S., KRAMER, MR, MATSUYA, A, KAWASHIMA, H, Tanino, M., Whitfield, E.J., Christie KR, Harada E, Okido T, Todokoro, F., Saichi N, Singh, N.K., Sasaki, T., Numa, H., Sakata K, NOBUSHIMA, S, MCCOMBIE, RW, Kawashima, H., Kawahara, Y., Zhao, Q., Haberer, G., Bruskiewich, R.M., NAMIKI, N, IKEO, K, Ikawa, H., Nobuta K, Nakaoka H, Piegu, B., Tanino, M., Tateno, Y., KUBOOKA, H, Tanaka, T., HSING, YI, Antonio, B. A., Kim, H-R, SATO, Y, An G, Saichi, N., Suzuki, M., CHRISTIE, KR, Fuks, G., Barrero RA, APWEILER, R, Sato, Y., Tyagi, A. K., ITO, Y, YAMASAKI, C, FUKS, G, AONO, R, YAMAMOTO, M, YAMAMOTO, N, TADA, M, O'Donovan, C. C., TODOKORO, F, Kim H, WU, J, ZUCCOLO, A, OKIDO, T, Shibata M, Matsuya, A., McCombie, R. W., Koyanagi KO, HOSOKAWA, S, Apweiler, R., Chaparro C, BARRERO, RA, Tanaka T, Nobuta, K., Fujii, Y., Tyagi AK, SANBONMATSU, R, SAKATA, K, An S, Echeverria, M., Sakai, H., Tatusova, T., Fujisawa M, Sakata, K., Kawashima H, Lin, Y. C., WING, RA, OOTA, S, Wu, J., Habara, T., Whitfield EJ, LU, C, An, S., Lin, Y-C, Wu, J., Hoen DR, O'DONOVAN, CC, Han B, SHINSO, Y, Smith White B, Whitfield, E. J., Okido, T., Green, P.J., TATENO, Y, KIKUCHI, S, Kawahara, Y., Apweiler, R., Wu J, Kramer, M.R., Kikuchi S, Matsumoto, T., Kawashima, H., Hoen, D.R., Ito Y, Nobushima S, ZHAO, Q, SASAKI, T, Souvorov, A., Tada, M., Sakai, Y., LIEBERHERR, D, Sanbonmatsu R, McCombie, R.W., Fujii Y, Matsuya, A., Fuks, G., Lieberherr, D., Lieberherr D, Antonio, B.A., Ikawa H, Sakata, K., Raghuvanshi, S., MATSUMOTO, T, SAICHI, N, Nobushima, S., Yamamoto N, Gojobori T, Sakai Y, Yamamoto M, Singh NK, Hsing, Y. I., Smith-White, B., Lu C, NAGAMURA, Y, Khurana, J. P., AN, S, Tada M, Souvorov, A., Shibata, M., O'Donovan CC, Sakai H, KANNO, M, Nagamura Y, FUJII, Y, KAWAHARA, Y, Kikuchi, S., AN, G, Sasaki, T., Meyers, B. C., YAMAGUCHI, K, Suzuki, M., Han, B., ZUCCOLO, ANDREA, CHAPARRO, C, Bruskiewich RM, Chaparro, C., Aono, R., SOUVOROV, A, Nakaoka, H., O’Donovan, C.C., OHYANAGI, H, Yamasaki, C., Imanishi T, Lonsdale D, TANINO, M, BUREAU, TE, Lu, C., Panaud, O., Yamaguchi K, Kanno, M., Wing, R.A., Sato, Y., Matsumoto T, ITOH, T, GOJOBORI, T, Panaud, O., Messing, J., Haberer G, Saichi, N., Matsuya A, Wing RA, Khurana JP, Tyagi, A.K., Namiki, N., Itoh, T., Itoh, T., Imanishi, T., SINGH, NK, Matsumoto, T., Nagamura, Y., Yamamoto, M., RAGHUVANSHI, S, Takeda, J. I., Wei FJ, Takeda J, WHITFIELD, EJ, Gojobori, T. +359 morecore +2 more sourcesStudy on the Pasting Properties of Indica and Japonica Waxy Rice
Foods, 2022 In this study, the physicochemical properties of indica (IWR) and japonica (JWR) waxy rice were investigated to find the critical factor that differentiates the pasting behaviors among the two cultivars. The results showed that the peak viscosity of 5 IWR flours was in the range of 1242 to 1371 cP, which was significantly higher than 4 JWR flours (667 ...Sicong Fang, Cheng Chen, Yuan Yao, John Nsor-Atindana, Fei Liu, Maoshen Chen, Fang Zhong +6 moreopenaire +3 more sourcesGolden Indica and Japonica Rice Lines Amenable to Deregulation [PDF]
Plant Physiology, 2003 AbstractAs an important step toward free access and, thus, impact of GoldenRice, a freedom-to-operate situation has been achieved for developing countries for the technology involved. Specifically, to carry the invention beyond its initial “proof-of-concept” status in a Japonica rice (Oryza sativa) cultivar, we report here on two transformed elite ...Hoa TT, Al-Babili S, Schaub P, Potrykus I, Beyer P +4 moreopenaire +4 more sources
