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Optimal linkage disequilibrium splitting [PDF]
Abstract Motivation A few algorithms have been developed for splitting the genome in nearly independent blocks of linkage disequilibrium. Due to the complexity of this problem, these algorithms rely on heuristics, which makes them suboptimal.
Privé F.
openaire +5 more sources
Cosmopolitan linkage disequilibrium maps [PDF]
Linkage maps have been invaluable for the positional cloning of many genes involved in severe human diseases. Standard genetic linkage maps have been constructed for this purpose from the Centre d'Etude du Polymorphisme Humain and other panels, and have ...
Gibson Jane +4 more
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Volume measures for linkage disequilibrium [PDF]
Background Defining measures of linkage disequilibrium (LD) that have good small sample properties and are applicable to multiallelic markers poses some challenges. The potential of volume measures in this context has been noted before, but their use has
Lin Chia-Ho, Chen Yuguo, Sabatti Chiara
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Association testing strategy for data from dense marker panels. [PDF]
Genome wide association studies have been usually analyzed in a univariate manner. The commonly used univariate tests have one degree of freedom and assume an additive mode of inheritance.
Donghyung Lee, Silviu-Alin Bacanu
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Linkage disequilibrium in wild mice. [PDF]
Crosses between laboratory strains of mice provide a powerful way of detecting quantitative trait loci for complex traits related to human disease. Hundreds of these loci have been detected, but only a small number of the underlying causative genes have ...
Cathy C Laurie +8 more
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Structural variants in linkage disequilibrium with GWAS-significant SNPs [PDF]
With the recent expansion of structural variant identification in the human genome, understanding the role of these impactful variants in disease architecture is critically important.
Hao Liang +3 more
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Mapping Genes through the Use of Linkage Disequilibrium Generated by Genetic Drift: ‘Drift Mapping’ in Small Populations with No Demographic Expansion [PDF]
Linkage disequilibrium has been a powerful tool in identifying rare disease alleles in human populations. To date, most research has been directed to isolated populations which have undergone a bottleneck followed by rapid exponential expansion.
Joseph D. Terwilliger +3 more
openalex +4 more sources
Assortative Mating and Linkage Disequilibrium [PDF]
Assortative mating has been suggested to result in an increase in heritability and additive genetic variance through an increase in linkage disequilibrium.
Philip W. Hedrick
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Linkage Disequilibrium Decay in Selected Cattle Breeds [PDF]
Linkage disequilibrium (LD) maps are fundamental tools for exploring the genetic basis of traits of interest in any species. Quantifying LD patterns in cattle breeds has been made possible due to the availability of huge quantities of SNPs through modern
Farhad Bordbar +3 more
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Long-range linkage disequilibrium in French beef cattle breeds [PDF]
Background Linkage disequilibrium (LD) is a key parameter to study the history of populations and to identify and fine map quantitative trait loci (QTL) and it has been studied for many years in animal populations.
Abdelmajid El Hou +4 more
doaj +2 more sources

