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Optimal linkage disequilibrium splitting [PDF]

open access: yesBioinformatics, 2021
Abstract Motivation A few algorithms have been developed for splitting the genome in nearly independent blocks of linkage disequilibrium. Due to the complexity of this problem, these algorithms rely on heuristics, which makes them suboptimal.
Privé F.
openaire   +5 more sources

Cosmopolitan linkage disequilibrium maps [PDF]

open access: yesHuman Genomics, 2005
Linkage maps have been invaluable for the positional cloning of many genes involved in severe human diseases. Standard genetic linkage maps have been constructed for this purpose from the Centre d'Etude du Polymorphisme Humain and other panels, and have ...
Gibson Jane   +4 more
doaj   +4 more sources

Volume measures for linkage disequilibrium [PDF]

open access: yesBMC Genetics, 2006
Background Defining measures of linkage disequilibrium (LD) that have good small sample properties and are applicable to multiallelic markers poses some challenges. The potential of volume measures in this context has been noted before, but their use has
Lin Chia-Ho, Chen Yuguo, Sabatti Chiara
doaj   +5 more sources

Association testing strategy for data from dense marker panels. [PDF]

open access: yesPLoS ONE, 2013
Genome wide association studies have been usually analyzed in a univariate manner. The commonly used univariate tests have one degree of freedom and assume an additive mode of inheritance.
Donghyung Lee, Silviu-Alin Bacanu
doaj   +6 more sources

Linkage disequilibrium in wild mice. [PDF]

open access: yesPLoS Genetics, 2007
Crosses between laboratory strains of mice provide a powerful way of detecting quantitative trait loci for complex traits related to human disease. Hundreds of these loci have been detected, but only a small number of the underlying causative genes have ...
Cathy C Laurie   +8 more
doaj   +4 more sources

Structural variants in linkage disequilibrium with GWAS-significant SNPs [PDF]

open access: yesHeliyon
With the recent expansion of structural variant identification in the human genome, understanding the role of these impactful variants in disease architecture is critically important.
Hao Liang   +3 more
doaj   +2 more sources

Mapping Genes through the Use of Linkage Disequilibrium Generated by Genetic Drift: ‘Drift Mapping’ in Small Populations with No Demographic Expansion [PDF]

open access: bronze, 1998
Linkage disequilibrium has been a powerful tool in identifying rare disease alleles in human populations. To date, most research has been directed to isolated populations which have undergone a bottleneck followed by rapid exponential expansion.
Joseph D. Terwilliger   +3 more
openalex   +4 more sources

Assortative Mating and Linkage Disequilibrium [PDF]

open access: yesG3: Genes, Genomes, Genetics, 2017
Assortative mating has been suggested to result in an increase in heritability and additive genetic variance through an increase in linkage disequilibrium.
Philip W. Hedrick
doaj   +4 more sources

Linkage Disequilibrium Decay in Selected Cattle Breeds [PDF]

open access: yesAnimals
Linkage disequilibrium (LD) maps are fundamental tools for exploring the genetic basis of traits of interest in any species. Quantifying LD patterns in cattle breeds has been made possible due to the availability of huge quantities of SNPs through modern
Farhad Bordbar   +3 more
doaj   +2 more sources

Long-range linkage disequilibrium in French beef cattle breeds [PDF]

open access: goldGenetics Selection Evolution, 2021
Background Linkage disequilibrium (LD) is a key parameter to study the history of populations and to identify and fine map quantitative trait loci (QTL) and it has been studied for many years in animal populations.
Abdelmajid El Hou   +4 more
doaj   +2 more sources

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