Results 121 to 130 of about 1,015,464 (310)

A light‐triggered Time‐Resolved X‐ray Solution Scattering (TR‐XSS) workflow with application to protein conformational dynamics

open access: yesFEBS Open Bio, EarlyView.
Time‐resolved X‐ray solution scattering captures how proteins change shape in real time under near‐native conditions. This article presents a practical workflow for light‐triggered TR‐XSS experiments, from data collection to structural refinement. Using a calcium‐transporting membrane protein as an example, the approach can be broadly applied to study ...
Fatemeh Sabzian‐Molaei   +3 more
wiley   +1 more source

Sensitivity Analysis and Uncertainty of a Myocardial Infarction Model

open access: yesMathematics
There is uncertainty in the results of any mathematical model due to different reasons. It is important to estimate this uncertainty. Sensitivity analysis is commonly used to estimate how the changes in the input parameters affect the solutions of the ...
Benito Chen-Charpentier   +1 more
doaj   +1 more source

Estimating sensitivity indices based on Gaussian process metamodels with compactly supported correlation functions

open access: yes
Specific formulae are derived for quadrature-based estimators of global sensitivity indices when the unknown function can be modeled by a regression plus stationary Gaussian process using the Gaussian, Bohman, or cubic correlation functions.
Svenson, Joshua   +3 more
core   +1 more source

Applicability of mitotic figure counting by deep learning: a development and pan‐cancer validation study

open access: yesFEBS Open Bio, EarlyView.
In this study, we developed a deep learning method for mitotic figure counting in H&E‐stained whole‐slide images and evaluated its prognostic impact in 13 external validation cohorts from seven different cancer types. Patients with more mitotic figures per mm2 had significantly worse patient outcome in all the studied cancer types except colorectal ...
Joakim Kalsnes   +32 more
wiley   +1 more source

Analysing the significance of small conformational changes and low occupancy states in serial crystallographic data

open access: yesFEBS Open Bio, EarlyView.
This protocol paper outlines methods to establish the success of a time‐resolved serial crystallographic experiment, by means of statistical analysis of timepoint data in reciprocal space and models in real space. We show how to amplify the signal from excited states to visualise structural changes in successful experiments.
Jake Hill   +4 more
wiley   +1 more source

A Sensitivity Approach to Force Calculation in Electrostatic MEMS Devices

open access: yes, 2007
This paper presents a novel method for the computation of force in an electrostatically operated MEMS device. The approach is based on Continuum Design Senstivity Analysis (CDSA) and can be used with any analysis system.
Lowther, D. A.   +10 more
core  

Screening and epitope characterization of Nidogen‐2‐specific nanobodies

open access: yesFEBS Open Bio, EarlyView.
Camel immunization and phage display were employed to generate high‐affinity VHH nanobodies against Nidogen‐2. After library construction, biopanning, ELISA screening, sequencing, and recombinant expression, selected nanobodies were purified and characterized, leading to the preliminary exploration of a nanobody‐based sandwich ELISA for specific ...
Jianchuan Wen   +9 more
wiley   +1 more source

RDDA: Rectified Discriminatory Delta-Adjust

open access: yesIEEE Access
This paper introduces Rectified Discriminatory Delta-Adjust (RDDA), a novel methodology that enhances interpolation-based predictive modeling through adaptive sensitivity parameters.
Ziad F. Doughan, Sari S. Itani
doaj   +1 more source

Estimation in causal graphical models [PDF]

open access: yes
Pearl (2000), Spirtes et al (1993) and Lauritzen (2001) set up a new framework to encode the causal relationships between the random variables by a causal Bayesian network.
Daneshkhah, Alireza
core  

Evolutionarily divergent DUF4465 domains have a common vitamin B12‐binding function

open access: yesFEBS Open Bio, EarlyView.
We show that DUF4465 family proteins, widespread across bacteria from gut microbiomes, hydrothermal vents, and soil, share a common vitamin B12‐binding function. These augmented β‐jellyroll proteins bind vitamin B12 via extended loops. Our findings establish sequence‐diverse DUF4465 proteins as a widespread class of B12‐binding proteins, highlighting ...
Charlea Clarke   +4 more
wiley   +1 more source

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