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Effects of Misspecifying Genetic Parameters in Lod Score Analysis
Biometrics, 1986The lod score method is widely used to test linkage and to estimate the recombination fraction between a disease locus and a marker locus. The parameters (gene frequency, penetrance, and degree of dominance) are assumed to be known at each locus. This condition may not be fulfilled at the disease locus.
F Clerget-Darpoux
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9 Extension of the lod score: The mod score
Advances in Genetics, 2001F Clerget-Darpoux
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Distribution of lod Scores in Oligogenic Linkage Analysis
Genetic Epidemiology, 2001In variance component oligogenic linkage analysis it can happen that the residual additive genetic variance bounds to zero when estimating the effect of the ith quantitative trait locus. Using quantitative trait Q1 from the Genetic Analysis Workshop 12 simulated general population data, we compare the observed lod scores from oli‐gogenic linkage ...
J T, Williams +5 more
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Lod Score Curves for Phase-Unknown Matings
Human Heredity, 1996For a phase-unknown nuclear family, we show that the likelihood and lod score are unimodal, and we describe conditions under which the maximum occurs at recombination fraction theta = 0, theta = 1/2, and 0 < theta < 1/2. These simply stated necessary and sufficient conditions seem to have escaped the notice of previous statistical geneticists.
T, Hulbert-Shearon, M, Boehnke, K, Lange
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Lods, wrods, and mods: The interpretation of lod scores calculated under different models
Genetic Epidemiology, 1994AbstractIn this paper we examine the relationships among classical lod scores, “wrod” scores (lod scores calculated under the wrong genetic model), and “mod” scores (lod scores maximized over genetic model parameters). We compare the behavior of these scores when the state of nature is linkage to their behavior when the state of nature is no linkage ...
S E, Hodge, R C, Elston
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Interpretation of LOD scores with a set of marker loci
Genetic Epidemiology, 1984AbstractThe problem discussed is that of interpreting LOD scores when multiple markers are tested for linkage with a particular disease locus. Provided the tests are based on independent segregations, both the maximum and the average LOD can be translated into a score that would have the same significance level were it the result of a single test.
E. A. Thompson, Walter E. Nance
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