Results 51 to 60 of about 24,742 (210)

Comparison and validation of some ITS primer pairs useful for fungal metabarcoding studies.

PLoS ONE, 2014
Current metabarcoding studies aiming to characterize microbial communities generally rely on the amplification and sequencing of relatively short DNA regions.
Michiel Op De Beeck, Bart Lievens, Pieter Busschaert, Stéphan Declerck, Jaco Vangronsveld, Jan V Colpaert   +5 more
doaj   +1 more source

Plant biodiversity assessment through pollen DNA metabarcoding in Natura 2000 habitats (Italian Alps)

Scientific Reports, 2021
Monitoring biodiversity is of increasing importance in natural ecosystems. Metabarcoding can be used as a powerful molecular tool to complement traditional biodiversity monitoring, as total environmental DNA can be analyzed from complex samples ...
Kleopatra Leontidou, Despoina Vokou, Anna Sandionigi, Antonia Bruno, Maria Lazarina, Johannes De Groeve, Mingai Li, Claudio Varotto, Matteo Girardi, Maurizio Casiraghi, Antonella Cristofori   +10 more
doaj   +1 more source

DNA Metabarcoding of Amazonian Ichthyoplankton Swarms

PLOS ONE, 2017
Les forêts tropicales humides abritent une biodiversité extraordinaire. On pense que le bassin amazonien abrite 30 % de toutes les espèces de poissons de rivière dans le monde. Les informations sur l'écologie, la reproduction et le recrutement de la plupart des espèces font toujours défaut, ce qui entrave la gestion des pêches et le succès des ...
Marie-Eugénie Maggia, Yves Vigouroux, Jean‐François Renno, Fabrice Duponchelle, Érick Desmarais, Jesús Núñez-Rodríguez, Carmen Rosa García-Dávila, Fernando M. Carvajal‐Vallejos, Emmanuel Paradis, Jean Martin, Cédric Mariac   +10 more
openaire   +7 more sources

Comparative environmental RNA and DNA metabarcoding analysis of river algae and arthropods for ecological surveys and water quality assessment

Scientific Reports, 2022
Environmental DNA (eDNA) metabarcoding is widely used for species analysis, while the use of environmental RNA (eRNA) metabarcoding is more limited. We conducted comparative eDNA/eRNA metabarcoding of the algae and arthropods (aquatic insects) in water ...
Kaede Miyata, Yasuaki Inoue, Yuto Amano, Tohru Nishioka, Tomohisa Nagaike, Takamitsu Kawaguchi, Osamu Morita, Masayuki Yamane, Hiroshi Honda   +8 more
doaj   +1 more source

Improving plant DNA metabarcoding accuracy with ecological filters and Angiosperms353: Field and pollen microscopy validation

Applications in Plant Sciences
Premise Metabarcoding has become a successful tool for the identification of species in ecological assemblages. However, the usefulness of metabarcoding for identifying plant species has been hampered due to a lack of universal gene regions that work ...
Reed Clark Benkendorf, Emily J. Woodworth, Paul J. CaraDonna, Jane E. Ogilvie, Sophie Taddeo, Jeremie B. Fant   +5 more
doaj   +1 more source

Laying Down the Foundations for Qualitative and Quantitative Freshwater Zooplankton Metabarcoding Surveys

Environmental DNA
Metabarcoding has been proven to be a highly effective tool for surveying biodiversity in aquatic ecosystems. Despite the recent explosion of metabarcoding studies, relatively few efforts have focused on freshwater zooplankton communities, even though ...
Jonas Bylemans, Didier Azam, Anne‐Laure Besnard, Simon Blanchet, Cecile Chardon, Gérard Lacroix, Leslie Laine, Stephen Mulero, Carine Puppo, Murielle Richard, Marine Vautier, Isabelle Domaizon   +11 more
doaj   +1 more source

Guidance and best practices for species identification using eDNA metabarcoding – When do you call a cod a cod? [PDF]

Metabarcoding and Metagenomics
With the rapid uptake of environmental DNA (eDNA) metabarcoding for a wide range of conservation and management uses, there is a growing need for guidance and best practices for species identification. A range of methodological and interpretive decisions
Alison W. Watts, Zachary Gold, Nastassia V. Patin, Nicolaus G. Adams, Jacoby D. Baker, Fouad El Baidouri, Erin Grey, Ann E. Holmes, Kym Jacobson, Sean Jungbluth, Tadashi Kajita, Anders Kiledal, Matthew A. Lemay, Enrique Montes, Frank E. Muller-Karger, Jeffrey Miller, Matthew B. Ogburn, Kathleen J. Pitz, Katherine Silliman, Andrew Thompson, Luke R. Thompson   +20 more
doaj   +3 more sources

Environmental DNA metabarcoding – the future of biomonitoring

, 2020
Presentación realizada en el Curso de capacitación teórico - demostrativo - "Monitoreo de la biodiversidad con metabarcoding" organizado por el Instituto Humboldt los días 24 al 27 de noviembre del año 2020.
Pawlowski, Jan
core  

Transforming gastrointestinal helminth parasite identification in vertebrate hosts with metabarcoding: a systematic review

Parasites & Vectors
Background Gastrointestinal helminths are a very widespread group of intestinal parasites that can cause major health issues in their hosts, including severe illness or death.
Madison L. Miller, Christopher Rota, Amy Welsh   +2 more
doaj   +1 more source

Molecular metrics to monitor ecological status of large rivers: Implementation of diatom DNA metabarcoding in the Joint Danube Survey 4

Ecological Indicators
The Joint Danube Survey (JDS) is a regular transnational survey to monitor the quality of the Danube and its main tributaries, in accordance with the EU Water Framework Directive.
Kálmán Tapolczai, Teofana Chonova, Dana Fidlerová, Jarmila Makovinská, Demetrio Mora, Alexander Weigand, Jonas Zimmermann   +6 more
doaj   +1 more source