Results 241 to 250 of about 213,527 (258)

Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways

2007 IEEE 7th International Symposium on BioInformatics and BioEngineering, 2007
Network mapping is a convenient tool for comparing and exploring biological networks; it can be used for predicting unknown pathways, fast and meaningful searching of databases, and potentially establishing evolutionary relations. Unfortunately, existing tools for mapping paths into general networks (PathBlast) or trees into tree networks allowing gaps
Qiong Cheng, Robert W. Harrison, Alexander Zelikovsky   +2 more
openaire   +1 more source

Predicting novel pathways in genome-scale metabolic networks

Biochemical Society Transactions, 2010
Elementary-modes analysis has become a well-established theoretical tool in metabolic pathway analysis. It allows one to decompose complex metabolic networks into the smallest functional entities, which can be interpreted as biochemical pathways. This analysis has, in medium-size metabolic networks, led to the successful theoretical prediction of ...
Stefan, Schuster, Luís F, de Figueiredo, Christoph, Kaleta   +2 more
openaire   +2 more sources

Text Mining for Metabolic Pathways, Signaling Cascades, and Protein Networks

Science's STKE, 2005
The complexity of the information stored in databases and publications on metabolic and signaling pathways, the high throughput of experimental data, and the growing number of publications make it imperative to provide systems to help the researcher navigate through these interrelated information resources.
Hoffmann, Robert, Krallinger, Martin, Andrés-León, Eduardo, Tamames, Javier, Blaschke, Christian, Valencia, Alfonso   +5 more
openaire   +3 more sources

Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks

Biotechnology and Bioengineering, 2004
AbstractCentral carbon metabolism of the yeast Saccharomyces cerevisiae was analyzed using metabolic pathway analysis tools. Elementary flux modes for three substrates (glucose, galactose, and ethanol) were determined using the catabolic reactions occurring in yeast.
Tunahan, Cakir, Betül, Kirdar, Kutlu O, Ulgen   +2 more
openaire   +2 more sources

Investigating Metabolic Pathways and Networks

2019
Md. Altaf-Ul-Amin, Shigehiko Kanaya, Zeti-Azura Mohamed-Hussein   +2 more
openaire   +1 more source

Dysregulation of multiple metabolic networks related to brain transmethylation and polyamine pathways in Alzheimer disease: A targeted metabolomic and transcriptomic study

PLoS Medicine, 2020
Chad Blackshear, Mammen Oommen A, Michael Griswold   +2 more
exaly  

gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota

Nature Biotechnology, 2023
Jingyuan Fu, Dylan Dodd, Victoria Pascal Andreu   +2 more
exaly  

What Can Causal Networks Tell Us about Metabolic Pathways?

PLoS Computational Biology, 2012
Daniel Kliebenstein, Gary Churchill, Rachael Hageman Blair   +2 more
exaly  

Computational tools for the synthetic design of biochemical pathways

Nature Reviews Microbiology, 2012
Rainer Breitling, Renske Van Raaphorst, Marnix H Medema   +2 more
exaly  

Reconstruction of biological pathways and metabolic networks from in silico labeled metabolites

Biotechnology Journal, 2017
Vassily Hatzimanikatis, Noushin Hadadi, Jasmin Hafner   +2 more
exaly