Results 31 to 40 of about 213,527 (258)

VitisCyc: A metabolic pathway knowledgebase for grapevine (Vitis vinifera)

Frontiers in Plant Science, 2014
We have developed VitisCyc, a grapevine-specific metabolic pathway database that allows researchers to i) search and browse the database for its various components such as metabolic pathways, reactions, compounds, genes and proteins, ii) compare ...
Sushma eNaithani, Rajani eRaja, Elijah Nathaniel Waddell, Justin eElser, Satyanarayana eGouthu, Laurent G. Deluc, Pankaj eJaiswal   +6 more
doaj   +1 more source

Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models. [PDF]

PLoS ONE, 2017
Over 100 genome-scale metabolic networks (GSMNs) have been published in recent years and widely used for phenotype prediction and pathway design.
Qianqian Yuan, Teng Huang, Peishun Li, Tong Hao, Feiran Li, Hongwu Ma, Zhiwen Wang, Xueming Zhao, Tao Chen, Igor Goryanin   +9 more
doaj   +1 more source

Alterations in cellular metabolism under different grades of glioma staging identified based on a multi-omics analysis strategy

Frontiers in Endocrinology, 2023
Glioma is a type of brain tumor closely related to abnormal cell metabolism. Firstly, multiple combinatorial sequencing studies have revealed this relationship.
Xianlei Yan, Xianlei Yan, Jinwei Li, Yang Zhang, Cong Liang, Pengcheng Liang, Tao Li, Quan Liu, Xuhui Hui   +8 more
doaj   +1 more source

Metabolic PathFinding: inferring relevant pathways in biochemical networks [PDF]

Nucleic Acids Research, 2005
Our knowledge of metabolism can be represented as a network comprising several thousands of nodes (compounds and reactions). Several groups applied graph theory to analyse the topological properties of this network and to infer metabolic pathways by path finding.
Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden   +3 more
openaire   +4 more sources

Phylophenetic properties of metabolic pathway topologies as revealed by global analysis

BMC Bioinformatics, 2006
Background As phenotypic features derived from heritable characters, the topologies of metabolic pathways contain both phylogenetic and phenetic components.
Sun Shiwei, Zhang Zefeng, Zhu Xiaopeng, Zhang Zhihua, Skogerbø Geir, Li Shaojuan, Zhang Yong, Lu Hongchao, Shi Baochen, Chen Runsheng   +9 more
doaj   +1 more source

Quantitative proteomic characterization of human sperm cryopreservation: using data-independent acquisition mass spectrometry

BMC Urology, 2019
Background Human sperm cryopreservation is a simple and effective approach for male fertility preservation. Methods To identify potential proteomic changes in this process, data-independent acquisition (DIA), a technology with high quantitative accuracy ...
Longlong Fu, Qi An, Kaishu Zhang, Ying Liu, Yue Tong, Jianfeng Xu, Fang Zhou, Xiaowei Wang, Ying Guo, Wenhong Lu, Xiaowei Liang, Yiqun Gu   +11 more
doaj   +1 more source

Gut microbiota alterations in critically Ill patients with carbapenem-resistant Enterobacteriaceae colonization: A clinical analysis

Frontiers in Microbiology, 2023
BackgroundCarbapenem-resistant Enterobacteriaceae (CRE) are an emerging concern for global health and are associated with high morbidity and mortality in critically ill patients.
Moon Seong Baek, Seungil Kim, Won-Young Kim, Mi-Na Kweon, Jin Won Huh   +4 more
doaj   +1 more source

Discriminating response groups in metabolic and regulatory pathway networks [PDF]

Bioinformatics, 2012
Abstract Motivation: Analysis of omics experiments generates lists of entities (genes, metabolites, etc.) selected based on specific behavior, such as changes in response to stress or other signals. Functional interpretation of these lists often uses category enrichment tests using functional annotations like Gene Ontology terms and ...
John L. Van Hemert, Julie A. Dickerson
openaire   +2 more sources

Cancer metabolism: a modeling perspective

Frontiers in Physiology, 2015
Tumor cells alter their metabolism to maintain unregulated cellular proliferation and survival, but this transformation leaves them reliant on constant supply of nutrients and energy.
Pouyan eGhaffari Nouran, Adil eMardinoglu, Adil eMardinoglu, Jens eNielsen, Jens eNielsen, Jens eNielsen   +5 more
doaj   +1 more source

Deciphering rice metabolic flux reprograming under salinity stress via in silico metabolic modeling

Computational and Structural Biotechnology Journal, 2020
Rice is one of the most economically important commodities globally. However, rice plants are salt susceptible species in which high salinity can significantly constrain its productivity. Several physiological parameters in adaptation to salt stress have
Kwanjeera Wanichthanarak, Chuthamas Boonchai, Thammaporn Kojonna, Supachitra Chadchawan, Wichian Sangwongchai, Maysaya Thitisaksakul   +5 more
doaj   +1 more source