Results 11 to 20 of about 241,688 (237)

BioNessie - a grid enabled biochemical networks simulation environment [PDF]

open access: yes, 2008
The simulation of biochemical networks provides insight and understanding about the underlying biochemical processes and pathways used by cells and organisms.
Ajayi, O.   +5 more
core   +8 more sources

A statistical mechanics description of environmental variability in metabolic networks [PDF]

open access: yes, 2014
Many of the chemical reactions that take place within a living cell are irreversible. Due to evolutionary pressures, the number of allowable reactions within these systems are highly constrained and thus the resulting metabolic networks display ...
Crofts, J.J., Estrada, Ernesto
core   +3 more sources

Exploring metabolic pathway disruption in the subchronic phencyclidine model of schizophrenia with the generalized singular value decomposition [PDF]

open access: yes, 2011
The quantification of experimentally-induced alterations in biological pathways remains a major challenge in systems biology. One example of this is the quantitative characterization of alterations in defined, established metabolic pathways from complex ...
Dawson, Neil   +6 more
core   +6 more sources

'BioNessie(G) - a grid enabled biochemical networks simulation environment [PDF]

open access: yes, 2008
The simulation of biochemical networks provides insight and understanding about the underlying biochemical processes and pathways used by cells and organisms.
Liu, X   +5 more
core   +6 more sources

Path finding methods accounting for stoichiometry in metabolic networks [PDF]

open access: yes, 2011
Copyright © 2011 Pey et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution ...
Prada, J   +11 more
core   +1 more source

On functional module detection in metabolic networks [PDF]

open access: yes, 2013
Functional modules of metabolic networks are essential for understanding the metabolism of an organism as a whole. With the vast amount of experimental data and the construction of complex and large-scale, often genome-wide, models, the computer-aided ...
Koch, Ina   +3 more
core   +1 more source

Benchmarking procedures for high-throughput context specific reconstruction algorithms

open access: yesFrontiers in Physiology, 2016
Recent progress in high-throughput data acquisition has shifted the focus from data generation to processing and understanding of how to integrate collected information.
Maria ePires Pacheco   +2 more
doaj   +1 more source

Evolution under Fluctuating Environments Explains Observed Robustness in Metabolic Networks [PDF]

open access: yes, 2010
Copyright: © 2010 Soyer, Pfeiffer. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and ...
Pfeiffer, Thomas   +6 more
core   +1 more source

A Bioinformatics-Assisted Review on Iron Metabolism and Immune System to Identify Potential Biomarkers of Exercise Stress-Induced Immunosuppression

open access: yesBiomedicines, 2022
The immune function is closely related to iron (Fe) homeostasis and allostasis. The aim of this bioinformatics-assisted review was twofold; (i) to update the current knowledge of Fe metabolism and its relationship to the immune system, and (ii) to ...
Diego A. Bonilla   +9 more
doaj   +1 more source

TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. [PDF]

open access: yes, 2014
The metabolic network of a cell represents the catabolic and anabolic reactions that interconvert small molecules (metabolites) through the activity of enzymes, transporters and non-catalyzed chemical reactions.
Opperdoes, F.R. (Fred)   +249 more
core   +4 more sources

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