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Metagenome sequencing and 768 microbial genomes from cold seep in South China Sea [PDF]
Scientific Data, 2022 Measurement(s) metagenome assembled genomes Technology Type(s) metagenome sequencing and genome binning Sample Characteristic - Organism microorganism Sample Characteristic - Environment marine cold seep biome Sample Characteristic - Location South China
Huan Zhang +8 more
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Prediction accuracy for feed intake and body weight gain using host genomic and rumen metagenomic data in beef cattle [PDF]
Genetics Selection EvolutionBackground Host genomic and rumen metagenome data can predict feed efficiency traits, supporting management decisions and increasing profitability. This study estimated the proportion of variation of average daily dry matter intake and average daily gain
Andrew Lakamp +8 more
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Frontiers in Microbiology, 2022 Metagenome assembly is a core yet methodologically challenging step for taxonomic classification and functional annotation of a microbiome. This study aims to generate the high-resolution human gut metagenome using both Illumina and Nanopore platforms ...
Lianwei Ye +8 more
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Phage therapy for Clostridioides difficile infection
Frontiers in Immunology, 2022 Clostridioides difficile is endemic in the intestinal tract of healthy people. However, it is responsible for many healthcare-associated infections, such as nosocomial diarrhea following antibiotic treatment.
Kosuke Fujimoto +3 more
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iMeta, 2022 It has been proven that three‐dimensional protein structures could be modeled by supplementing homologous sequences with metagenome sequences. Even though a large volume of metagenome data is utilized for such purposes, a significant proportion of ...
Pengshuo Yang, Kang Ning
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mSystems, 2023 Several studies have compared metagenome inference performance in different human body sites; however, none specifically reported on the vaginal microbiome.
Kayla A. Carter +8 more
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DNA Research, 2022 AbstractVarious microorganisms exist in environments, and each of which has an optimal growth temperature (OGT). The relationship between genomic information and OGT of each species has long been studied, and one such study revealed that OGT of prokaryotes can be accurately predicted based on the fraction of seven amino acids (IVYWREL) among all ...
Masaomi Kurokawa +6 more
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Persistent memory as an effective alternative to random access memory in metagenome assembly
BMC Bioinformatics, 2022 Background The assembly of metagenomes decomposes members of complex microbe communities and allows the characterization of these genomes without laborious cultivation or single-cell metagenomics. Metagenome assembly is a process that is memory intensive
Jingchao Sun +5 more
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Integrating pan-genome with metagenome for microbial community profiling
Computational and Structural Biotechnology Journal, 2021 Advances in sequencing technology have led to the increased availability of genomes and metagenomes, which has greatly facilitated microbial pan-genome and metagenome analysis in the community.
Chaofang Zhong +3 more
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Nature Reviews Genetics, 2019 Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly moving from research to clinical laboratories. This emerging approach is changing how physicians diagnose and treat infectious disease, with applications spanning a wide range of ...
Charles Y. Chiu, Steven A. Miller
openaire +4 more sources