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A database of animal metagenomes
Scientific Data, 2022 Measurement(s) Metagenome metadata Technology Type(s) Collection and integration the metagenomic information of multiple animal species Factor Type(s) animal Sample Characteristic - Organism animal Sample Characteristic - Environment metagenome Sample ...
Ruirui Hu +19 more
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Phage therapy for Clostridioides difficile infection
Frontiers in Immunology, 2022 Clostridioides difficile is endemic in the intestinal tract of healthy people. However, it is responsible for many healthcare-associated infections, such as nosocomial diarrhea following antibiotic treatment.
Kosuke Fujimoto +3 more
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Frontiers in Microbiology, 2022 Metagenome assembly is a core yet methodologically challenging step for taxonomic classification and functional annotation of a microbiome. This study aims to generate the high-resolution human gut metagenome using both Illumina and Nanopore platforms ...
Lianwei Ye +8 more
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Metagenomics and antibiotics [PDF]
Clinical Microbiology and Infection, 2012 Most of the bacterial species that form part of the biosphere have never been cultivated. In this situation, a comprehensive study of bacterial communities requires the utilization of non-culture-based methods, which have been named metagenomics.
María Blanca Sánchez +3 more
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iMeta, 2022 It has been proven that three‐dimensional protein structures could be modeled by supplementing homologous sequences with metagenome sequences. Even though a large volume of metagenome data is utilized for such purposes, a significant proportion of ...
Pengshuo Yang, Kang Ning
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mSystems, 2023 Several studies have compared metagenome inference performance in different human body sites; however, none specifically reported on the vaginal microbiome.
Kayla A. Carter +8 more
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A Primer on Metagenomics [PDF]
PLoS Computational Biology, 2010 Metagenomics is a discipline that enables the genomic study of uncultured microorganisms. Faster, cheaper sequencing technologies and the ability to sequence uncultured microbes sampled directly from their habitats are expanding and transforming our view of the microbial world.
Bourne, Philip E. +3 more
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Metagenomics and probiotics [PDF]
Clinical Microbiology and Infection, 2012 The development of extensive sequencing methods has allowed metagenomic studies on the human gut microbiome to be carried out. This has tremendously increased our knowledge on gut microbiota composition and activity, allowing microbiota aberrations related to different diseases to be identified.
Gueimonde Fernández, Miguel +1 more
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DNA Research, 2022 AbstractVarious microorganisms exist in environments, and each of which has an optimal growth temperature (OGT). The relationship between genomic information and OGT of each species has long been studied, and one such study revealed that OGT of prokaryotes can be accurately predicted based on the fraction of seven amino acids (IVYWREL) among all ...
Masaomi Kurokawa +6 more
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Persistent memory as an effective alternative to random access memory in metagenome assembly
BMC Bioinformatics, 2022 Background The assembly of metagenomes decomposes members of complex microbe communities and allows the characterization of these genomes without laborious cultivation or single-cell metagenomics. Metagenome assembly is a process that is memory intensive
Jingchao Sun +5 more
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