Results 91 to 100 of about 140,801 (215)

Metagenome Assembly and Metagenome-Assembled Genome Sequences from a Historical Oil Field Located in Wietze, Germany [PDF]

, 2020
Crude oil-polluted sites are a global threat, raising the demand for remediation worldwide. Here, we investigated a crude oil metagenome from a former borehole in Wietze, Germany, and reconstructed 42 metagenome-assembled genomes, many of which contained
Eze, Michael O, Lütgert, Stephan A., Neubauer, Hannes, Daniel, Rolf, Kraft, Alina A., Balouri, Angeliki, Kraft, Alina A, Lütgert, Stephan A, Wemheuer, Bernd, Eze, Michael O., Sieven, Anja, Putonti, Catherine   +11 more
core   +1 more source

Metagenomic and culture‐based insights into host and plasmid contexts of high‐risk ARGs in poultry farm environments

iMetaOmics, EarlyView.
Shotgun metagenomics and culture‐based isolate genomics revealed position‐associated high‐risk antibiotic resistance genes (ARGs) signals across poultry manure piles and surrounding soils. Culture‐confirmed Enterobacteriaceae and IncHI2A‐related blaNDM‐5 plasmid backgrounds further highlight priority host‐ARG‐plasmid contexts for farm antimicrobial ...
Yaling Wang, Lianwei Ye, Linan He, Zhenlong Wu, Yiwen Yang, Sheng Chen   +5 more
wiley   +1 more source

Effects of Glyphosate and Glyphosate‐Based Herbicides on the Mammalian Gut Microbiome: A Critical Review

Journal of Applied Toxicology, EarlyView.
ABSTRACT Glyphosate has long been considered to pose negligible direct risk to mammals on the grounds that its molecular target, 5‐enolpyruvylshikimate‐3‐phosphate synthase (EPSPS), of the shikimate pathway, is absent from animal cells. This rationale is inaccurate as a complete toxicological argument, because the shikimate pathway is present in some ...
Robin Mesnage
wiley   +1 more source

Metagenome assembled rumen-uncultured genomes (RUGs)

, 2020
DNA was sequenced from rumen contents from cattle, sheep, red deer and reindeer. We constructed 391 metagenome assembled rumen-uncultured genomes (RUGs).Glendinning, Laura. (2019).
Glendinning, Laura; id_orcid, Royal (Dick) School of Veterinary Studies   +1 more
core   +1 more source

GU0601 metagenome-assembled genomes (MAGs)

, 2023
Freshwater metagenome (Han River, Guri, South Korea)
Jae-Shin Kang (17120672), YeongJun Jang (17119609), JunMo Lee (10527132), Eun Hee Bae (17120675)   +3 more
core   +1 more source

Zinc‐stabilized stannous fluoride modulates the periodontal microbiome, reducing Fusobacteria, key Gram‐negative species, and overall inflammation within an experimental gingivitis clinical trial

Journal of Periodontology, EarlyView.
Abstract Background This study aimed to evaluate the effects of a dentifrice containing stannous fluoride stabilized with zinc phosphate on subgingival microbiome composition and clinical inflammation during experimental gingivitis, compared with a sodium fluoride control. Methods This investigation was conducted as a secondary analysis of a randomized,
Kristopher A. Kerns, Allison A. Naumann, Lay Y. Soon, Erik L. Hendrickson, Abdelahhad Barbour, Dandan Chen, Harsh M. Trivedi, Michael Glogauer, Jeffrey S. McLean   +8 more
wiley   +1 more source

Metagenome-assembled genomes (MAGs)

The MetaWRAP pipeline was employed for genome assembly and binning. Specifically, MEGAHIT was used to assemble sequences and generate contigs. Prodigal was used to predict open reading frames (ORFs) in each contig.
Zhou (18148486)
core   +1 more source

Metagenome assembled genomes inventory.

, 2022
Table describing the completeness and degree of contamination of the metagenome assembled genomes generated in this study. (CSV)
Rebecca M. Brotman (8552301), Sarah E. Brown (2501965), Michael T. France (8639613), Anne M. Rompalo (14013989), Jacques Ravel (5502)   +4 more
core   +1 more source

Higher NO3−‐N Levels Under Mulberry (Morus alba L.) Planting Enhanced CAZyme Abundance, Increasing Soil Carbon Stability

Land Degradation &Development, EarlyView.
ABSTRACT Afforestation is widely advocated for boosting carbon (C) sequestration. However, the stability of soil C pools in economically and culturally significant mulberry plantations remains poorly understood. The soil organic C (SOC) contents in different aggregates and the oxidizable OC fractions were measured.
Zi Yang, Weiguo Zhao, Jinjin Yang, Zhenjiang Wang, Weijun Zhu, Changyu Qiu, Qiang Lin, Meina Zhu, Mengdi Zhao   +8 more
wiley   +1 more source

From short to long: The impact of read length on metagenome assembly and binning

Methods in Ecology and Evolution
Metagenome sequencing not only plays a pivotal role in unravelling the genetic diversity and functional potential of microbial communities but also facilitates the discovery of genome context for microbial dark matter.
Xi Peng, Xingsheng Yang, Danrui Wang, Bo Zhao, Kai Feng, Qing He, Shang Wang, Ye Deng   +7 more
doaj   +1 more source