Results 81 to 90 of about 129,780 (292)

bacNeo: A Computational Toolkit for Identifying Bacteria‐Derived Neoantigens in Human Cancers

iMetaMed, EarlyView.
We present bacterial neoantigen (bacNeo), a multi‐omics‐based computational software to classify bacterial components (BACC), type bacteria‐bound HLA alleles (BACH), and prioritize bacterial peptides as neoantigens (BACP). Bacterial neoantigen potential is quantified by score for peptide antigenicity recognition & kinetics (SPARK), enabling ...
Yunzhe Wang, Li Yuan, Katie W. Gu, Xiangdong Cheng, Bo Wen, Zhao Zhang   +5 more
wiley   +1 more source

Metagenome Illumina Index

, 2022
 Data relating to the thesis:  Constraining Microbial Community Composition, Structure, and Function Within Acidic Geothermal Springs on São Miguel Island  This is the index used for the Metagenome data described in this thesis. This index will need to
Vincent Rennie (13875422)
core   +1 more source

Multi‐omics biomarkers for intestinal infection and inflammation in inflammatory bowel disease: Current evidence, translational challenges, and diagnostic opportunities

Interdisciplinary Medicine, EarlyView.
Prospective multi‐site cohorts, multi‐omics profiling, and computational analysis may help identify biomarker patterns across clinical settings in IBD and superimposed infections. With further mechanistic and clinical validation, these signals could support the development of practical multi‐analyte tools for more precise diagnosis and management ...
Ziyu Yang, Jiayi Yao, Xinxian Zhao, Yan Xu, Yifan Chen, Tianchi Chen, Ying Jian, Min Li   +7 more
wiley   +1 more source

Metagenome-assembled genome (MAG) information from Nome Creek, Alaska soils

, 2019
Information on 54 prokaryotic metagenome-assembled genome (MAG) sequences binned from a co-assembly of 12 soil samples from this wildfire impacted upland Alaskan boreal forest soils.
Neslihan Tas (6191723)
core   +1 more source

Water Metagenome Databases.zip

, 2023
Unpublished metagenome ...
Cunmin Wang (14568482)
core   +1 more source

Association between blenderized tube feeds and differential oropharynx, stomach, and stool microbiome signatures relative to conventional formula feeds in children fed via enteral tube: A cross‐sectional study

Journal of Parenteral and Enteral Nutrition, EarlyView.
Abstract Background Blenderized gastrostomy tube feeds are associated with reduced gastrointestinal symptoms. We hypothesize that patients receiving blenderized tube feeds, compared with standard formula, will have less gastric‐oropharyngeal microbial overlap, a possible biomarker of less gastroesophageal refluxate, and differences in beta diversity in
Bridget M. Hron, Yanjia Jason Zhang, Clare Golden, Christopher Chalmers, Grace Nemec, Elise Delaney, Evrim Ozcan, Michael Kim, Lauren Jalali, Toni Solari, Jasper Brezsny‐Feldman, Eric J. Alm, Lynn Bry, Rachel Rosen   +13 more
wiley   +1 more source

Parameters for metagenome analysis.

, 2021
Parameters for metagenome analysis.
Michihiro Araki (61338), Kou Ikejima (11890324), Katsuji Morioka (11890321), Yuki Kuriya (11890318), Masahiro Murata (8501400), Mika Nomura (682966), Hideki Sawada (2550499), Tomoaki Ichie (2929254), Kohsuke Adachi (2076934), Prasert Tongununui (11890315)   +9 more
core   +1 more source

Oral PHGG ameliorates atopic dermatitis‐like dermatitis with concurrent modulation of colonic IgA and cecal microbiota: implications for the gut–skin axis

Journal of the Science of Food and Agriculture, EarlyView.
Abstract BACKGROUND Atopic dermatitis (AD) is increasingly recognized as a systemic inflammatory disorder linked to intestinal immune and microbiome dysregulation. However, whether dietary galactomannan fibers can mitigate AD through coordinated modulation of the gut–skin axis remains unexplored.
Derrick Kakooza, Hyeonjun Yu, Jonghyun Jeong, Jung Cheul Shin, Woo Jung Kim, Sung‐Kwon Moon, Hoon Kim   +6 more
wiley   +1 more source

Metagenomics [PDF]

Nature Biotechnology, 2019
Gaurav Saxena, Narendra Kumar, Nandkishor More, Ram Naresh Bharagava   +3 more
openaire   +3 more sources

Microbial metagenomics.

Genome biology, 2005
A report on the 105th Annual Meeting of the American Society for Microbiology, Atlanta, USA, 5-9 June 2005.
Mongodin, Emmanuel F, Emerson, Joanne B, Nelson, Karen E   +2 more
openaire   +2 more sources