Results 81 to 90 of about 140,801 (215)

Metagenome Illumina Index

, 2022
 Data relating to the thesis:  Constraining Microbial Community Composition, Structure, and Function Within Acidic Geothermal Springs on São Miguel Island  This is the index used for the Metagenome data described in this thesis. This index will need to
Vincent Rennie (13875422)
core   +1 more source

Metagenome 221024

, 2023
Metagenome, mouse ...
Harusato, A (via Mendeley Data), Harusato, Akihito   +1 more
core   +1 more source

Function‐centered back‐tracing refines obesity‐associated gut microbiome signals beyond abundance‐based profiling

iMetaOmics, EarlyView.
By integrating taxonomic and functional profiling of 1543 adult gut metagenomes, this study identified microbial taxa and enzymatic functions associated with increasing Body Mass Index. Function‐centered taxonomic back‐tracing of branched‐chain amino acid transaminase, nucleotide diphosphatase, and phosphatidylserine decarboxylase revealed only limited
Silvia Petraro, Chiara Tarracchini, Leonardo Mancabelli, Gabriele Andrea Lugli, Francesca Turroni, Marco Ventura, Christian Milani   +6 more
wiley   +1 more source

Metagenome-assembled genome (MAG) information from Nome Creek, Alaska soils

, 2019
Information on 54 prokaryotic metagenome-assembled genome (MAG) sequences binned from a co-assembly of 12 soil samples from this wildfire impacted upland Alaskan boreal forest soils.
Neslihan Tas (6191723)
core   +1 more source

Gut microbiome seasonality is associated with dietary plasticity and coexistence in three sympatric Pamir ungulates

iMetaOmics, EarlyView.
This graphical abstract outlines a multi‐omics framework investigating the seasonal dietary composition and gut microbial communities of three coexisting ungulate species inhabiting the extreme high‐altitude Pamir Plateau (Ovis ammon polii, Capra sibirica, and Pseudois nayaur). By integrating dietary DNA metabarcoding, 16S rRNA gene sequencing, shotgun
Dilala Tuoliu, Lijiao Zhang, Muyang Wang, Wenxuan Xu, Kathreen Ruckstuhl, António Alves da Silva, Joana Alves, Hongchen Jiang, Weikang Yang   +8 more
wiley   +1 more source

ExMODE: A comprehensive resource for extremophile genomic and functional exploration

iMetaOmics, EarlyView.
ExMODE (https://db.genomics.cn/exmode/) integrates 3518 samples to build a unified extremophile resource, which hosts 1.35 billion habitat‐specific non‐redundant genes, 5.25 million representative protein structures, 67,026 metagenome‐assembled genomes (MAGs), and 164,132 biosynthetic gene clusters (BGCs). By combining sequence‐, structure‐, and genome‐
Denghui Li, Kailong Ma, Xiaoqiang Li, Jieni Wang, Zhen Cui, Yulu Zhang, Weiwen Wang, Jiawei Tong, Yang Guo, Zongan Wang, Peiyun Zeng, Jieyu Wang, Xiaokai Xu, Nannan Zhang, Yingying Zhang, Jing Chen, Qingjiang Hu, Wenzhen Yang, Zhiyong Li, Tao Yang, Wensi Du, Zhicheng Xu, Zhen Yue, Jian Wang, Guangyi Fan, Weijia Zhang, Xun Xu, Liujie Huo, Xiaofeng Wei, Liang Meng, Shanshan Liu   +30 more
wiley   +1 more source

Metagenome assemblies

, 2019
Metagenome assemblies of three Tara Ocean metagenome datasetsRed Sea (80m depth)Southern Ocean (790m depth)Southern Pacific Ocean (120m depth)
Joran Martijn (8038412)
core   +1 more source

Multi‐omics reveals gastrointestinal metabolic disorder‐induced diarrhea in postpartum dairy cows

iMetaOmics, EarlyView.
Nutritional diarrhea is a pervasive, costly challenge in dairy production. Using integrated metagenomic and metabolomic profiling, we identified coordinated microbial and metabolic alterations across the rumen, hindgut, and serum. In the rumen, enrichment of Prevotella sp.
Weixuan Tang, Yangyi Hao, Jiawei Zhang, Yajing Wang, Zhijun Cao, Hongjian Yang, Wei Wang, Shengli Li   +7 more
wiley   +1 more source

Metagenomic Association Analysis of Gut Symbiont Limosilactobacillus reuteri Without Host-Specific Genome Isolation

Frontiers in Microbiology, 2020
Limosilactobacillus reuteri is a model symbiont that colonizes the guts of vertebrates in studies on host adaptation of the gut symbiont. Previous studies have investigated host-specific phylogenetic and functional properties by isolating the genomic ...
Sein Park, Sein Park, Martin Steinegger, Martin Steinegger, Ho-Seong Cho, Jongsik Chun, Jongsik Chun, Jongsik Chun   +7 more
doaj   +1 more source

Metagenome-assembled genomes (MAGs) from biofloc microbiota.

We recovered over 500 metagenome-assembled genomes (MAGs) from the floc-associated microbiota of commercial biofloc aquaculture systems. These MAGs were then functionally annotated to understand the metabolic potential.
Rajeev Meora (16466445), Jang-Cheon Cho (8919272), Ilnam Kang (8732103), Ilsuk Jung (16468119)   +3 more
core   +1 more source