Results 71 to 80 of about 129,780 (292)

Translational metagenomics [PDF]

Journal of Translational Medicine, 2021
Selvasankar Murugesan, Souhaila Al Khodor   +1 more
openaire   +3 more sources

DOE JGI Metagenome Workflow [PDF]

, 2021
The DOE Joint Genome Institute (JGI) Metagenome Workflow performs metagenome data processing, including assembly; structural, functional, and taxonomic annotation; and binning of metagenomic data sets that are subsequently included into the Integrated ...
Reddy, TBK, Clum, Alicia, Yoshinaga, Yuko, Seshadri, Rekha, Bushnell, Brian, Varghese, Neha, Daum, Chris, Foster, Bryce, Ivanova, Natalia N, Mukherjee, Supratim, Chen, I-Min A, O’Malley, Ronan, Kyrpides, Nikos C, Huntemann, Marcel, Foster, Brian, Hajek, Patrick P, Eloe-Fadrosh, Emiley A, Copeland, Alex, Roux, Simon   +18 more
core   +1 more source

Co‐Infection of Brucella canis and Brucella melitensis in a Domestic Dog With Zoonotic Transmission to Human, China

Animal Research and One Health, EarlyView.
Source attribution figure for human and dogs Brucella canis infections. ABSTRACT We report a rare occurrence of genetic material from both Brucella canis and B. melitensis detected in a domesticated dog from Jiangsu Province, China. The detection was confirmed through serological assays, quantitative PCR (qPCR), metagenomic and genomic sequencing ...
Shengxin Ge, Jian Xu, Qingchun Shen, Jiabo Ding, Xiaowen Yang   +4 more
wiley   +1 more source

Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach

Genomics Data, 2015
Here, we report metagenome from the Tuwa hot spring, India using shotgun sequencing approach. Metagenome consisted of 541,379 sequences with 98.7 Mbps size with 46% G + C content.
Amitsinh Mangrola, Pravin Dudhagara, Prakash Koringa, C.G. Joshi, Mansi Parmar, Rajesh Patel   +5 more
doaj   +1 more source

metagenome-atlas/atlas: Small bug fixes

, 2019
ATLAS - Three commands to start analysing your metagenome ...
Silas Kieser, Jackson M. Tsuji, Richard Allen White III, Joe Brown, Sean M. Colby, Mattias de Hollander, Chris Overall, Colin Brislawn   +7 more
core   +1 more source

A Metagenome‐Assembled Genome Catalog From the Global Ruminant Microbiomes

Animal Research and One Health, EarlyView.
The Ruminant Gastrointestinal MAG Catalog (RGMC) is a comprehensive global resource offering 40,812 strain‐level genomes across 53 bacterial and 4 archaeal classes. It greatly surpasses prior efforts in scale and diversity, serving as an essential foundation for research in ruminant nutrition, microbial function, and methane mitigation.
Shizhe Zhang, Qiushuang Li, Bingzi Ouyang, Wenxing Wang, Xiang Zhou, Xiumin Zhang, Rong Wang, Zhiliang Tan, Min Wang   +8 more
wiley   +1 more source

Diversity of endophytic bacteria of Dendrobium officinale based on culture-dependent and culture-independent methods

Biotechnology & Biotechnological Equipment, 2017
Culture-dependent and culture-independent methods were compared and evaluated in the study of the endophytic diversity of Dendrobium officinale. Culture-independent methods consisted of polymerase chain reaction–denaturing gradient gel electrophoresis ...
Cong Pei, Chunyi Mi, Lihua Sun, Wenhong Liu, Ou Li, Xiufang Hu   +5 more
doaj   +1 more source

Cultivation-independent comprehensive survey of bacterial diversity in Tulsi Shyam Hot Springs, India

Genomics Data, 2015
A taxonomic description of bacteria was deduced from 5.78 Mb metagenomic sequence retrieved from Tulsi Shyam hot spring, India using bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP).
Anjana Ghelani, Rajesh Patel, Amitsinh Mangrola, Pravin Dudhagara   +3 more
doaj   +1 more source

Rewiring nutrition: Chemical insights into the physiological and microbiological roles of food's microconstituents

Food Biomacromolecules, EarlyView.
Bidirectional interactions between food‐derived sensory compounds, gut sensing and microbiota, host physiological feedback, and metabolite production within the food matrix collectively shape sensory perception, microbial dynamics, and metabolic health.
Mohammad Nazrul Islam Bhuiyan
wiley   +1 more source

metagenome-atlas/atlas: Functional annotation with eggNOG mapper V2

, 2019
ATLAS - Three commands to start analysing your metagenome ...
Silas Kieser, Jackson M. Tsuji, Richard Allen White III, Joe Brown, Sean M. Colby, Mattias de Hollander, Chris Overall, Colin Brislawn   +7 more
core   +1 more source