Results 61 to 70 of about 138,246 (299)

Viral metagenomics [PDF]

Reviews in Medical Virology, 2007
AbstractCharacterisation of new viruses is often hindered by difficulties in amplifying them in cell culture, limited antigenic/serological cross‐reactivity or the lack of nucleic acid hybridisation to known viral sequences. Numerous molecular methods have been used to genetically characterise new viruses without prior in vitro replication or the use ...
openaire   +2 more sources

Data on partial polyhydroxyalkanoate synthase genes (phaC) mined from Aaptos aaptos marine sponge-associated bacteria metagenome

Data in Brief, 2018
We report data associated with the identification of three polyhydroxyalkanoate synthase genes (phaC) isolated from the marine bacteria metagenome of Aaptos aaptos marine sponge in the waters of Bidong Island, Terengganu, Malaysia.
Tan Suet May Amelia, Al-Ashraf Abdullah Amirul, Kesaven Bhubalan   +2 more
doaj   +1 more source

Microbial metagenomics.

Genome biology, 2005
A report on the 105th Annual Meeting of the American Society for Microbiology, Atlanta, USA, 5-9 June 2005.
Mongodin, Emmanuel F, Emerson, Joanne B, Nelson, Karen E   +2 more
openaire   +2 more sources

Gut Microbial Release of Ferulic Acid From Germinated Quinoa Alleviates Obesity‐Associated Cognitive Impairment by Activating Hippocampal Mitophagy Associated with PINK1/Parkin Pathway

Advanced Science, EarlyView.
Liberation of ferulic acid by gut microbial feruloyl esterase mediates cognitive enhancement of germinated quinoa (GQF) on obese mice. Ferulic acid enriched in GQF is released by gut microbes Roseburia hominis and R. intestinalis and subsequently mediates the neuroprotective effects of GQF on obesity‐induced cognitive decline by activating hippocampal ...
Yongli Lan, Wengang Zhang, Lei Wang, Shiyang Zhao, Yujie Song, Xinze Wang, Yutang Wang, Xijuan Yang, Shaobo Ma, Junlin Ge, Rui Guo, Xuebo Liu   +11 more
wiley   +1 more source

DOE JGI Metagenome Workflow [PDF]

, 2021
The DOE Joint Genome Institute (JGI) Metagenome Workflow performs metagenome data processing, including assembly; structural, functional, and taxonomic annotation; and binning of metagenomic data sets that are subsequently included into the Integrated ...
Reddy, TBK, Clum, Alicia, Yoshinaga, Yuko, Seshadri, Rekha, Bushnell, Brian, Varghese, Neha, Daum, Chris, Foster, Bryce, Ivanova, Natalia N, Mukherjee, Supratim, Chen, I-Min A, O’Malley, Ronan, Kyrpides, Nikos C, Huntemann, Marcel, Foster, Brian, Hajek, Patrick P, Eloe-Fadrosh, Emiley A, Copeland, Alex, Roux, Simon   +18 more
core   +1 more source

Unveiling the Taxonomic Diversity and Unprecedented Biosynthetic Treasure of the Phylum Myxococcota

Advanced Science, EarlyView.
Natural products remain vital sources of therapeutics, and the phylum Myxococcota constitutes an especially rich reservoir for them. Based on decades of microbiological efforts, we present 154 new Myxococcota genomes and revise taxonomy quadrupling the number of families and genera.
Amay Ajaykumar Agrawal, Ronald Garcia, Guangyi Chen, Chantal D. Bader, Peter Sullivan, Alexander Popoff, Daniel Krug, Maja Hunter, Sebastian Walesch, Emilia Oueis, Christine Frank, Haowen Zhao, Joachim J. Hug, Sebastian Keller, Pascal Hirsch, Azat Tagirdzhanov, Tatiana Malygina, Mary Victory E. Gutierrez, Alexey Gurevich, Judith Boldt, Boyke Bunk, Jörg Overmann, Ulrich Nübel, Andreas Keller, Olga V. Kalinina, Rolf Müller   +25 more
wiley   +1 more source

Accessing the soil metagenome for studies of microbial diversity [PDF]

, 2011
Soil microbial communities contain the highest level of prokaryotic diversity of any environment, and metagenomic approaches involving the extraction of DNA from soil can improve our access to these communities.
Timothy M. Vogel, Clark, Ian, M., Hirsch, Penny,, Delmont, T. O., Constancias, Florentin, Delmont, Tom, Patrick Robe, Florentin Constancias, Penny R. Hirsch, Vogel, T. M., Clark, I. M., Constancias, F., Clark, Ian,, Simonet, P., Robe, P., Pascal Simonet, Cecillon, Sébastien, Hirsch, P. R., Vogel, Timothy M, Hirsch, Penny, R., Sébastien Cecillon, Cecillon, S., Robe, Patrick, Tom O. Delmont, Simonet, Pascal, Ian M. Clark   +25 more
core   +1 more source

Metagenome Databases

, 2022
Unpublished metagenome ...
Cunmin Wang (14211848)
core   +1 more source

Deep Learning‐Driven Discovery and Engineering of an Efficient PETase for Depolymerization and Detoxification of PET Microplastics Under Physiological Conditions

Advanced Science, EarlyView.
A deep learning–driven pipeline mining 246 million protein sequences uncovers AhPETase, an evolutionarily distinct PET hydrolase. Engineered variant AhPETaseM1 degrades post‐consumer PET microplastics under physiological conditions and reverses microplasticinduced cytotoxicity in human lung and colon cells, establishing enzymatic microplastic ...
Yuxuan Wang, Shijie He, Yuheng Chang, Sheng Mao, Jianan Canal Li, Binbin Chen, Hongxun Gao, Mingchun Xu, Chenxu Liu, Yajie Wang   +9 more
wiley   +1 more source

Mash Screen: high-throughput sequence containment estimation for genome discovery

Genome Biology, 2019
The MinHash algorithm has proven effective for rapidly estimating the resemblance of two genomes or metagenomes. However, this method cannot reliably estimate the containment of a genome within a metagenome.
Brian D. Ondov, Gabriel J. Starrett, Anna Sappington, Aleksandra Kostic, Sergey Koren, Christopher B. Buck, Adam M. Phillippy   +6 more
doaj   +1 more source