Results 101 to 110 of about 138,246 (299)

From short to long: The impact of read length on metagenome assembly and binning

Methods in Ecology and Evolution
Metagenome sequencing not only plays a pivotal role in unravelling the genetic diversity and functional potential of microbial communities but also facilitates the discovery of genome context for microbial dark matter.
Xi Peng, Xingsheng Yang, Danrui Wang, Bo Zhao, Kai Feng, Qing He, Shang Wang, Ye Deng   +7 more
doaj   +1 more source

Multi‐omics–driven precision medicine

iMeta, EarlyView.
Multi‐omics‐driven precision medicine (MODPM) provides a multiscale, continuously learnable framework that integrates genomics, epigenomics, transcriptomics, proteomics, metabolomics, microbiome profiles, and clinical data. Powered by artificial intelligence and foundation models, MODPM enables cross‐modal representation learning, contextual modeling ...
Huibo Li, Zhe Zhao, Yifan Zhang, Yao Ma, Gaofei Hu, Min Zeng, Zhanqun Yang, Zixuan Zhao, Xin Zhou, Wei Hu, Yuxuan Sun, Meng Su, Jun Li, Matthew Whiteman, Wei Fu, Chao Zhong, Lemin Zheng, Long Chen, Hairong Lv, Rongsheng Zhao, Yi Zhun Zhu   +20 more
wiley   +1 more source

Metagenome assemblies

, 2019
Metagenome assemblies of three Tara Ocean metagenome datasetsRed Sea (80m depth)Southern Ocean (790m depth)Southern Pacific Ocean (120m depth)
Joran Martijn (8038412)
core   +1 more source

Soil‐derived, gut‐dominant generalist bacteria shape the fitness of folivorous larvae

iMeta, EarlyView.
Whether Lepidoptera harbor a conserved core gut microbiome has long remained contentious. Through large‐scale microbiome profiling of folivorous larvae, their host plants, and associated soils across three climatically distinct regions of China, we identify two soil‐derived generalist bacteria, Ralstonia insidiosa and Delftia sp., that colonize 97.92 ...
Yu‐xuan Zheng, Ying Wang, Xiao‐man Zhang, Qian Jin, Yan Zhang, Gui‐fang Wang, Yong‐qi Shao, Jing Li, Cheng Sun, Wei‐dong Kong, Cai‐qing Yang, Ai‐bing Zhang   +11 more
wiley   +1 more source

Metagenome assembled genomes inventory.

, 2022
Table describing the completeness and degree of contamination of the metagenome assembled genomes generated in this study. (CSV)
Rebecca M. Brotman (8552301), Sarah E. Brown (2501965), Michael T. France (8639613), Anne M. Rompalo (14013989), Jacques Ravel (5502)   +4 more
core   +1 more source

Zinc‐stabilized stannous fluoride modulates the periodontal microbiome, reducing Fusobacteria, key Gram‐negative species, and overall inflammation within an experimental gingivitis clinical trial

Journal of Periodontology, EarlyView.
Abstract Background This study aimed to evaluate the effects of a dentifrice containing stannous fluoride stabilized with zinc phosphate on subgingival microbiome composition and clinical inflammation during experimental gingivitis, compared with a sodium fluoride control. Methods This investigation was conducted as a secondary analysis of a randomized,
Kristopher A. Kerns, Allison A. Naumann, Lay Y. Soon, Erik L. Hendrickson, Abdelahhad Barbour, Dandan Chen, Harsh M. Trivedi, Michael Glogauer, Jeffrey S. McLean   +8 more
wiley   +1 more source

Higher NO3−‐N Levels Under Mulberry (Morus alba L.) Planting Enhanced CAZyme Abundance, Increasing Soil Carbon Stability

Land Degradation &Development, EarlyView.
ABSTRACT Afforestation is widely advocated for boosting carbon (C) sequestration. However, the stability of soil C pools in economically and culturally significant mulberry plantations remains poorly understood. The soil organic C (SOC) contents in different aggregates and the oxidizable OC fractions were measured.
Zi Yang, Weiguo Zhao, Jinjin Yang, Zhenjiang Wang, Weijun Zhu, Changyu Qiu, Qiang Lin, Meina Zhu, Mengdi Zhao   +8 more
wiley   +1 more source

Bacterial diversity in longan orchard alluvial soil is influenced by cultivation time and soil properties

Frontiers in Soil Science
IntroductionLongan is a perennial crop and profitable export fruit well-suited to the Mekong Delta's climate and soils. Although soil deterioration in longan orchards has been studied, little research has addressed soil bacterial communities and their ...
Nguyen Khoi Nghia, Kovacs Emoke Dalma, Kovacs Melinda Haydee, Le Thi Xa, Lois Wright Morton, Hüseyin Barış Tecimen, Javad Robatjazi, Jegan Sekar, Hendra Gonsalve W. Lasar, Trung Thanh Nguyen, Nguyen Minh Phuong, Chau Thi Anh Thy, Do Thanh Luan, Nguyen Thi Kieu Oanh   +13 more
doaj   +1 more source

Cotton strips as a model substrate for analysis of leaf‐litter‐colonizing microbial assemblages in streams

Limnology and Oceanography: Methods, EarlyView.
Abstract Leaf‐litter decomposition is a key indicator of the functional integrity of stream ecosystems and cotton strips have been employed as a standard substrate for quantification of litter‐decomposition rates in streams across the globe. Cotton strips also offer a standardized method for assessing structural integrity of stream microbial ...
Trinity Shoemaker, Cynthia Nguyen, Scott D. Tiegs, David M. Costello, John J. Kelly   +4 more
wiley   +1 more source

Metagenomic and Metabolomic Analyses Reveal the Role of Gut Microbiome-Associated Metabolites in the Muscle Elasticity of the Large Yellow Croaker (Larimichthys crocea)

Animals
The large yellow croaker (LYC, Larimichthys crocea) is highly regarded for its delicious taste and unique flavor. The gut microbiota has the ability to affect the host muscle performance and elasticity by regulating nutrient metabolism.
Zhenheng Cheng, Hao Huang, Guangde Qiao, Yabing Wang, Xiaoshan Wang, Yanfeng Yue, Quanxin Gao, Shiming Peng   +7 more
doaj   +1 more source