Results 21 to 30 of about 153,489 (289)

Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories

Microbiome, 2020
Background Despite recent decreases in the cost of sequencing, shotgun metagenome sequencing remains more expensive compared with 16S rRNA amplicon sequencing.
Shan Sun, Roshonda B. Jones, Anthony A. Fodor   +2 more
doaj   +1 more source

Hiding in plain sight: the globally distributed bacterial candidate phylum PAUC34f [PDF]

, 2020
© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chen, M. L., Becraft, E. D., Pachiadaki, M., Brown, J. M., Jarett, J. K., Gasol, J. M., Ravin, N.
Becraft, Eric D., Brown, Julia M., Chen, Michael L., Gasol, Josep M., Herndl, Gerhard J., Jarett, Jessica K., Moser, Duane P., Nunoura, Takuro, Pachiadaki, Maria G., Ravin, Nikolai V., Stepanauskas, Ramunas, Woyke, Tanja   +11 more
core   +2 more sources

Bacterial tag encoded FLX titanium amplicon pyrosequencing (bTEFAP) based assessment of prokaryotic diversity in metagenome of Lonar soda lake, India

Genomics Data, 2015
Bacterial diversity and archaeal diversity in metagenome of the Lonar soda lake sediment were assessed by bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP).
Pravin Dudhagara, Anjana Ghelani, Rajesh Patel, Rajesh Chaudhari, Shreyas Bhatt   +4 more
doaj   +1 more source

The impact of sequence database choice on metaproteomic results in gut microbiota studies [PDF]

, 2016
Background: Elucidating the role of gut microbiota in physiological and pathological processes has recently emerged as a key research aim in life sciences.
Addis, Maria Filippa, Deligios, Massimo, Fraumene, Cristina, Manghina, Valeria, Martens, Lennart, Muth, Thilo, Pagnozzi, Daniela, Palomba, Antonio, Rapp, Erdmann, Tanca, Alessandro, Uzzau, Sergio   +10 more
core   +4 more sources

Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom [PDF]

, 2020
© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bhatnagar, S., Cowley, E. S., Kopf, S. H., Pérez Castro, S., Kearney, S., Dawson, S. C., Hanselmann, K.
Bhatnagar, Srijak, Castro, Sherlynette Pérez, Cowley, Elise S, Dawson, Scott C, Hanselmann, Kurt, Kearney, Sean, Kearney, Sean Michael, Kopf, Sebastian H, Pérez Castro, Sherlynette, Ruff, S. E   +9 more
core   +1 more source

Metagenomic sequence of saline desert microbiota from wild ass sanctuary, Little Rann of Kutch, Gujarat, India

Genomics Data, 2015
We report Metagenome from the saline desert soil sample of Little Rann of Kutch, Gujarat State, India. Metagenome consisted of 633,760 sequences with size 141,307,202 bp and 56% G + C content.
Rajesh Patel, Vishal Mevada, Dhaval Prajapati, Pravin Dudhagara, Prakash Koringa, C.G. Joshi   +5 more
doaj   +1 more source

Combining host and rumen metagenome profiling for selection in sheep: prediction of methane, feed efficiency, production, and health traits

Genetics Selection Evolution, 2023
Background Rumen microbes break down complex dietary carbohydrates into energy sources for the host and are increasingly shown to be a key aspect of animal performance.
Melanie K. Hess, Larissa Zetouni, Andrew S. Hess, Juliana Budel, Ken G. Dodds, Hannah M. Henry, Rudiger Brauning, Alan F. McCulloch, Sharon M. Hickey, Patricia L. Johnson, Sara Elmes, Janine Wing, Brooke Bryson, Kevin Knowler, Dianne Hyndman, Hayley Baird, Kathryn M. McRae, Arjan Jonker, Peter H. Janssen, John C. McEwan, Suzanne J. Rowe   +20 more
doaj   +1 more source

Metagenome sequencing of the microbial community of a solar saltern crystallizer pond at cáhuil lagoon, chile. [PDF]

, 2014
Cáhuil Lagoon in central Chile harbors distinct microbial communities in various solar salterns that are arranged as interconnected ponds with increasing salt concentrations.
Allen, Eric E, Astorga, Marcia, Bertoglio, Florencia, Blanchet, Marine, De la Iglesia, Rodrigo, Delgado, Yolaine, Delherbe, Nathalie, Docmac, Felipe, Elizondo-Patrone, Claudia, Gimpel, Carla, González, María Lorena, Gálvez, María Jesús, Hanselmann, Kurt, Henríquez-Castillo, Carlos, Ikeda, Priscila, Lopes do Santos, Adriana, Narváez, Silvia, Plominsky, Alvaro M, Rojas-Herrera, Marcelo, Santibañez, Francisco, Sorroche, Fernando, Trefault, Nicole, Ugalde, Juan A, Ulloa, Osvaldo, van den Engh, Gerrit, Vaulot, Daniel, von Dassow, Peter   +26 more
core   +4 more sources

Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria [PDF]

, 2019
Marine sponges are early-branching, filter-feeding metazoans that usually host complex microbiomes comprised of several, currently uncultivatable symbiotic lineages.
Cox, Cymon, da Rocha, Ulisses N, da Silva Costa, Rodrigo, Hentschel, Ute, Karimi, Elham, Keller-Costa, Tina, Slaby, Beate M   +6 more
core   +4 more sources

From metagenomics to the metagenome: Conceptual change and the rhetoric of translational genomic research [PDF]

, 2009
As the international genomic research community moves from the tool-making efforts of the Human Genome Project into biomedical applications of those tools, new metaphors are being suggested as useful to understanding how our genes work – and for ...
Huss, John Edward, Juengst, Eric Thomas
core   +1 more source